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Report for CCDS17775.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17775.1 Public Mus musculus 3 Amy2a5 23 108 98 CCDS HistoryNCBI Gene:109959Re-query CCDS DB by CCDS ID:17775.1Re-query CCDS DB by GeneID:109959See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17775.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098673.4 ENSMUSP00000096270.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098673.4Link to Ensembl Protein Viewer:ENSMUSP00000096270.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098673Re-query CCDS DB by Protein ID:ENSMUSP00000096270
Original member Current member NCBI NM_001042711.2 NP_001036176.1 Accepted alive Link to Nucleotide Sequence:NM_001042711.2Link to Protein Sequence:NP_001036176.1Re-query CCDS DB by Nucleotide ID:NM_001042711Re-query CCDS DB by Protein ID:NP_001036176Link to BLAST:NP_001036176.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036176.1 508 P00688 508 100% 0 0

Chromosomal Locations for CCDS 17775.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 113249211 113249400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113251502 113251627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113251736 113251854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113253018 113253117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113253210 113253332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113254010 113254143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113255810 113256040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113256773 113256961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113258038 113258184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113258515 113258682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGAAGTTCGTTCTGCTGCTTTCCCTCATTGGGTTCTGCTGGGCTCAATATGACCCACATACTTCAGATG
GGAGGACTGCTATTGTCCACCTGTTCGAGTGGCGCTGGGTTGATATTGCCAAGGAATGTGAGCGATACTT
AGCTCCTAAGGGATTTGGAGGGGTGCAGGTCTCTCCACCCAATGAAAACGTTGTAGTTCATAACCCATCA
AGACCTTGGTGGGAAAGATACCAACCAATCAGCTATAAAATCTGCACAAGGTCTGGAAATGAAGATGAAT
TCAGAGACATGGTGACAAGGTGCAACAATGTTGGTGTCCGTATTTATGTGGATGCTGTCATTAACCACAT
GTGTGGCGCAGGCAATCCTGCAGGAACAAGCAGTACCTGTGGAAGTTACCTCAATCCAAATAACAGGGAA
TTCCCAGCAGTTCCATACTCTGCTTGGGACTTTAACGATAATAAATGTAATGGAGAAATTGATAACTACA
ATGATGCTTATCAGGTCAGAAATTGTCGTCTGACTGGCCTTCTGGATCTTGCACTTGAGAAAGATTATGT
TCGTACCAAGGTGGCTGACTATATGAACCATCTCATTGACATTGGAGTAGCAGGGTTCAGACTTGATGCT
GCTAAGCACATGTGGCCTGGAGACATAAAGGCAGTTTTGGACAAACTGCATAATCTCAATACAAAATGGT
TCTCCCAAGGAAGCAGACCTTTCATTTTCCAAGAGGTCATTGATCTGGGTGGTGAGGCAATTAAAGGTAG
TGAGTACTTTGGAAATGGCCGTGTGACAGAATTCAAGTATGGTGCAAAACTTGGCACAGTTATCCGCAAG
TGGAATGGCGAGAAGATGTCCTATTTAAAGAACTGGGGAGAAGGTTGGGGTTTGGTGCCTTCTGACAGAG
CCCTTGTGTTTGTGGACAACCATGATAATCAGCGAGGACATGGTGCTGGAGGATCATCCATCCTGACATT
CTGGGATGCTAGAATGTATAAAATGGCTGTCGGATTTATGTTGGCTCATCCTTATGGATTCACAAGAGTA
ATGTCAAGTTACCGTTGGAATAGAAATTTCCAGAATGGAAAAGATCAGAATGACTGGATTGGACCACCCA
ATAACAATGGAGTAACAAAAGAAGTGACCATTAATGCAGACACTACTTGTGGCAATGACTGGGTCTGTGA
ACACAGATGGCGTCAAATCAGGAACATGGTTGCCTTCAGGAATGTGGTCAATGGTCAGCCTTTTTCAAAC
TGGTGGGATAATAACAGCAACCAAGTAGCTTTTAGCAGAGGAAACAGAGGATTCATTGTCTTTAACAATG
ATGACTGGGCTTTGTCAGCCACTTTACAGACTGGTCTTCCTGCTGGCACATACTGTGATGTCATCTCTGG
AGATAAGGTCGATGGCAATTGCACTGGACTTAGAGTGAATGTTGGCAGTGATGGCAAAGCTCACTTTTCC
ATTAGTAACTCTGCTGAGGACCCATTTATTGCAATCCATGCTGACTCAAAATTGTAA

Translation (508 aa):
MKFVLLLSLIGFCWAQYDPHTSDGRTAIVHLFEWRWVDIAKECERYLAPKGFGGVQVSPPNENVVVHNPS
RPWWERYQPISYKICTRSGNEDEFRDMVTRCNNVGVRIYVDAVINHMCGAGNPAGTSSTCGSYLNPNNRE
FPAVPYSAWDFNDNKCNGEIDNYNDAYQVRNCRLTGLLDLALEKDYVRTKVADYMNHLIDIGVAGFRLDA
AKHMWPGDIKAVLDKLHNLNTKWFSQGSRPFIFQEVIDLGGEAIKGSEYFGNGRVTEFKYGAKLGTVIRK
WNGEKMSYLKNWGEGWGLVPSDRALVFVDNHDNQRGHGAGGSSILTFWDARMYKMAVGFMLAHPYGFTRV
MSSYRWNRNFQNGKDQNDWIGPPNNNGVTKEVTINADTTCGNDWVCEHRWRQIRNMVAFRNVVNGQPFSN
WWDNNSNQVAFSRGNRGFIVFNNDDWALSATLQTGLPAGTYCDVISGDKVDGNCTGLRVNVGSDGKAHFS
ISNSAEDPFIAIHADSKL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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