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Report for CCDS17835.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17835.1 Public Mus musculus 3 Cfi 23 108 98 CCDS HistoryNCBI Gene:12630Re-query CCDS DB by CCDS ID:17835.1Re-query CCDS DB by GeneID:12630See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17835.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077918.6 ENSMUSP00000077074.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077918.6Link to Ensembl Protein Viewer:ENSMUSP00000077074.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000077918Re-query CCDS DB by Protein ID:ENSMUSP00000077074
Original member NCBI NM_007686.3 NP_031712.2 Updated not alive Link to Nucleotide Sequence:NM_007686.3Link to Protein Sequence:NP_031712.2Re-query CCDS DB by Nucleotide ID:NM_007686Re-query CCDS DB by Protein ID:NP_031712
Current member NCBI NM_007686.4 NP_031712.2 Accepted alive Link to Nucleotide Sequence:NM_007686.4Link to Protein Sequence:NP_031712.2Re-query CCDS DB by Nucleotide ID:NM_007686Re-query CCDS DB by Protein ID:NP_031712Link to BLAST:NP_031712.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031712.2 603 Q61129 603 100% 0 0

Chromosomal Locations for CCDS 17835.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 129836810 129836866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129848556 129848835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129850694 129850847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129854960 129855141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129858355 129858468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129858713 129858823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129861966 129861992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129862130 129862150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129865341 129865397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129868207 129868310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129868481 129868584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129872841 129873118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129874286 129874390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129874921 129875138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1812 nt):
ATGAAGCTCGCTCATCTCAGTCTCTTTCTCTTGGCTCTCCACTTGAGTTCTTCCAGGTCCCCGTCAGCAT
CAGATCTGCCTCAGGAGGAGCTGGTCGATCAGAAATGCTTACTGCAGAAATACACGCATCGCTCCTGTAA
CAAGGTCTTCTGCCAGCCGTGGCAGAGATGTATCGAAGGCACCTGTATCTGCAAACTCCCCTACCAGTGC
CCAAGGGCTGGCACCCCAGTGTGTGCCATGAATGGAAGGAGCTACCCGACATACTGTCACCAGAAGAGTT
TCGAATGTCTTCACCCAGAGATCAAGTTTTCACATAATGGAACGTGCGCAGCTGAAGGAAAGTTTAATGT
TTCCTTAATTTATGGGAGAACAAAAACAGAGGGACTTGTTCAAGTCAAACTTGTGGACCAAGATGAGAGA
ATGTTCATATGTAAAAACAGCTGGAGCATGGCGGAGGCCAACGTGGCCTGCGTCGACCTTGGATTTCCAC
TGGGTGTTCGTGACATACAAGGAAGTTTTAATATATCTGGAAATCTCCATATAAACGACACTGAATGCCT
GCATGTACATTGCCGGGGAGTAGAGACCAGTTTGGCGGAGTGTGCCTTTACGAAGAGGAGAACTGAGTTG
TCCAATGGCTTGGCGGGGGTAGTGTGTTACAAGCAGGATGCAGATTTCCCAACGAGTCTGTCCTTCCAGT
GTGTGAATGGGAAGCACATTCCTCAGGAGAAAGCCTGCAACGGTGTCAATGACTGTGGAGACCAAAGCGA
TGAGCTGTGTTGCAAAGGTTGCCGAGGTAACGCTTCCCTTTGTAAGTCGGGAGTTTGCATTCCAGACCAA
TACAAGTGTAATGGTGAGGTGGACTGCATCACTGGTGAAGATGAGAGCCGTTGTGAAGAAGACCGACAGC
AGAACATTCCAAAAGGCCTTGCACGGTCAGCTCAAGGAGAAGCTGAAATTGAAACTGAAGAAACAGAAAT
GTTGACTCCTGGTATGGACAATGAAAGAAAACGGATAAAGTCCTTATTACCTAAACTCTCCTGTGGAGTC
AAAAGAAACACTCACACTCGCAGGAAACGAGTGATCGGAGGGAAGCCAGCGAATGTGGGAGACTACCCAT
GGCAGGTGGCAATTAAGGATGGCCAAAGAATCACCTGTGGTGGCATTTATATCGGTGGCTGTTGGATTCT
GACTGCTGCGCACTGTGTCAGACCCAGTAGAGCTCACAGTTACCAAGTCTGGACGGCTTTATTAGACTGG
CTAAAACCTAACTCTCAGTTGGGAATTCAAACGGTGAAGAGAGTTATTGTTCACGAGAAATATAATGGAG
CCACCTTCCAAAATGACATAGCTTTGATTGAAATGAAAATGCACACGGGCAAGAAAGAATGTGAACTCCC
CAATTCCGTCCCTGCCTGCGTCCCGTGGTCTCCATATCTGTTCCAACCGAATGACAGATGTATCATCTCT
GGATGGGGTCGAGGGAAAGATAACCAAAAAGTCTACTCACTCAGGTGGGGCGAAGTTGATCTAATAGGCA
ACTGCTCTCAGTTTTACCCAGATCGCTACTATGAGAAAGAGATGCAGTGCGCAGGTACGCGTGATGGGTC
CATTGATGCCTGCAAAGGAGACTCCGGAGGCCCCTTGGTCTGTGAGGATATCAACAATGTCACTTACGTT
TGGGGCATTGTGAGCTGGGGAGAAAATTGTGGGAAGCCCGAGTTCCCAGGTGTTTACACCAGAGTGGCCA
ATTATTTTGATTGGATTAGCTATCACGTAGGAAGGTCTCTTGTTTCTCAACACAATGTCTGA

Translation (603 aa):
MKLAHLSLFLLALHLSSSRSPSASDLPQEELVDQKCLLQKYTHRSCNKVFCQPWQRCIEGTCICKLPYQC
PRAGTPVCAMNGRSYPTYCHQKSFECLHPEIKFSHNGTCAAEGKFNVSLIYGRTKTEGLVQVKLVDQDER
MFICKNSWSMAEANVACVDLGFPLGVRDIQGSFNISGNLHINDTECLHVHCRGVETSLAECAFTKRRTEL
SNGLAGVVCYKQDADFPTSLSFQCVNGKHIPQEKACNGVNDCGDQSDELCCKGCRGNASLCKSGVCIPDQ
YKCNGEVDCITGEDESRCEEDRQQNIPKGLARSAQGEAEIETEETEMLTPGMDNERKRIKSLLPKLSCGV
KRNTHTRRKRVIGGKPANVGDYPWQVAIKDGQRITCGGIYIGGCWILTAAHCVRPSRAHSYQVWTALLDW
LKPNSQLGIQTVKRVIVHEKYNGATFQNDIALIEMKMHTGKKECELPNSVPACVPWSPYLFQPNDRCIIS
GWGRGKDNQKVYSLRWGEVDLIGNCSQFYPDRYYEKEMQCAGTRDGSIDACKGDSGGPLVCEDINNVTYV
WGIVSWGENCGKPEFPGVYTRVANYFDWISYHVGRSLVSQHNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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