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Report for CCDS17853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17853.1 Public Mus musculus 3 Bdh2 23 108 98 CCDS HistoryNCBI Gene:69772Re-query CCDS DB by CCDS ID:17853.1Re-query CCDS DB by GeneID:69772See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17853.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029817.10 ENSMUSP00000029817.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029817.10Link to Ensembl Protein Viewer:ENSMUSP00000029817.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029817Re-query CCDS DB by Protein ID:ENSMUSP00000029817
Original member Current member NCBI NM_027208.2 NP_081484.1 Accepted alive Link to Nucleotide Sequence:NM_027208.2Link to Protein Sequence:NP_081484.1Re-query CCDS DB by Nucleotide ID:NM_027208Re-query CCDS DB by Protein ID:NP_081484Link to BLAST:NP_081484.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081484.1 245 Q8JZV9 245 100% 0 0

Chromosomal Locations for CCDS 17853.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 135285596 135285667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135288261 135288339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135289555 135289651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135290994 135291102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135295228 135295288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135296820 135296933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135300674 135300732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135301562 135301654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135304168 135304221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGGCCGACTGGACGGCAAAGTTATTGTCCTGACAGCTGCCGCTCAAGGGATTGGACGGGCATCCGCAT
TA
GCTTTTGCAAGAGAAGGAGCCAAAGTCATAGCCACAGATATCAACGAGTCCAAACTCCAGGAGCTGGA
A
AGTTACCGAGGTATTCAAACTCGAGTCCTTGATGTCACAAAGAAGAGACAGATTGATCAGTTTGCCTCA
GAA
ATCGAGAGAATTGATGTTCTCTTTAATGTTGCTGGTTTTGTCCACCACGGAACCATCCTGGATTGCG
AG
GAAAAAGACTGGGACTTCTCAATGAATCTCAACGTCCGCAGCATGTTCCTGATGATCAAAGCATTCCT
T
CCCAAAATGCTTGCTCAGAAGTCAGGCAACATTATCAACATGTCGTCTGTGGCCTCCAGCATCAAAGGG
GTG
GAGAACAGATGTGTGTACAGTGCTACCAAGGCGGCTGTGATCGGTCTCACCAAGTCCGTGGCTGCAG
AC
TTCATCCAACAGGGCATCAGATGCAACTGTGTGTGTCCAGGAACGGTTGACACCCCATCTCTGCAAGA
A
AGAATACAAGCCAGAGACAATCCCAAAGAGGCACTGAAAACTTTCCTAAACAGACAAAAGACGGGAAGG
TTT
GCGTCGGCCGAAGAGGTCGCTCTGCTCTGCGTATACCTGGCCTCGGACGAGTCAGCCTATGTAACTG
GC
AACCCTGTCATCATTGATGGGGGCTGGAGCCTGTGA


Translation (245 aa):
MGRLDGKVIVLTAAAQGIGRASALAFAREGAKVIATDINESKLQELESYRGIQTRVLDVTKKRQIDQFAS
E
IERIDVLFNVA
GFVHHGTILDCEEKDWDFSMNLNVRSMFLMIKAFLPKMLAQKSGNIINMSSVASSIKG
V
ENRCVYSATKAAVIGLTKSVAADFIQQGIRCNCVCP
GTVDTPSLQERIQARDNPKEALKTFLNRQKTGR
F
ASAEEVALLCVYLASDE
SAYVTGNPVIIDGGWSL



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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