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Report for CCDS17886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17886.1 Public Mus musculus 3 Clca3a1 23 108 98 CCDS HistoryNCBI Gene:12722Re-query CCDS DB by CCDS ID:17886.1Re-query CCDS DB by GeneID:12722See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17886.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059091.5 ENSMUSP00000054526.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059091.5Link to Ensembl Protein Viewer:ENSMUSP00000054526.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000059091Re-query CCDS DB by Protein ID:ENSMUSP00000054526
Original member Current member NCBI NM_009899.4 NP_034029.2 Accepted alive Link to Nucleotide Sequence:NM_009899.4Link to Protein Sequence:NP_034029.2Re-query CCDS DB by Nucleotide ID:NM_009899Re-query CCDS DB by Protein ID:NP_034029Link to BLAST:NP_034029.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034029.2 902 Q9QX15 902 100% 0 0

Chromosomal Locations for CCDS 17886.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 144730612 144730955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144736917 144737156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144737863 144738030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144746764 144747028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144747370 144747594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144748401 144748501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144749665 144749842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144751934 144752158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144754729 144754956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144755154 144755331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144757958 144758066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144758407 144758554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144759171 144759311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144760564 144760722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2709 nt):
ATGGTGCCAGGGCTGCAGGTCCTTCTGTTCCTCACCCTGCATCTCCTGCAGAACACAGAGAGCTCCATGG
TG
CATCTCAACAGCAATGGATACGAGGGTGTGGTCATTGCCATTAACCCCAGTGTGCCGGAGGACGAAAG
G
CTCATCCCAAGCATAAAGGAAATGGTAACTCAAGCCTCTACCTACCTGTTTGAAGCCAGCCAAGGAAGA
GTT
TATTTCAGAAACATAAGCATATTAGTCCCGATGACCTGGAAGTCAAAACCTGAGTACTTAATGCCAA
AA
CGAGAATCGTATGACAAAGCAGACGTCATAGTTGCGGATCCTCACCTGCAACATGGAGACGACCCCTA
C
ACCCTTCAGTATGGACAGTGTGGGGACAGAGGACAGTACATACACTTCACTCCAAACTTCCTACTCACT
GAT
AACTTGCGTATCTACGGACCCCGAGGCAGAGTCTTTGTCCATGAGTGGGCCCATCTCCGGTGGGGAG
TA
TTTGATGAGTATAACGTGGACCAGCCTTTCTACATGTCTAGAAAGAACACTATAGAAGCAACAAGGTG
T
TCCACCAGGATCACTGGCACCAATGTGGTTCACAACTGTGAGAGAGGCAACTGTGTCACAAGGGCGTGC
CGG
CGTGACTCGAAGACACGGCTGTATGAACCCAAATGTACATTTATCCCAGACAAAATACAGACGGCTG
GG
GCCTCCATAATGTTCATGCAAAACCTTAATTCTGTGGTTGAATTTTGCACAGAAAAAAACCACAATGC
A
GAAGCCCCAAACCTACAAAACAAAATGTGCAATCGCAGAAGCACGTGGGATGTAATCAAGACGTCTGCT
GAC
TTTCAGAATGCCCCTCCCATGAGAGGAACAGAAGCCCCTCCTCCACCTACATTTTCACTGCTCAAGT
CC
AGAAGGCGAGTGGTGTGCTTGGTGCTGGATAAATCTGGAAGCATGGACAAAGAAGACCGTCTTATTCG
A
ATGAATCAAGCAGCAGAACTGTACTTAACTCAAATTGTGGAAAAGGAGTCTATGGTTGGATTAGTCACA
TTT
GACAGCGCTGCCCACATCCAAAATTATCTAATAAAAATAACGAGTAGTAGTGACTACCAAAAGATCA
CC
GCAAACCTCCCCCAACAGGCTTCTGGTGGAACTTCAATTTGCCATGGACTCCAGGCAGGATTTCAGGC
A
ATTACCTCCAGTGACCAGAGCACTTCCGGTTCTGAGATCGTATTGCTGACAGATGGGGAAGATAATGGA
ATA
CGTTCCTGCTTTGAGGCCGTCTCTCGCAGCGGTGCCATCATCCACACCATCGCTCTGGGGCCTTCGG
CT
GCCCGAGAACTGGAGACTCTGTCGGACATGACAGGAGGGCTTCGTTTCTATGCCAACAAAGACCTAAA
C
AGCCTTATCGATGCTTTCAGTAGAATTTCATCTACAAGTGGCAGCGTCTCCCAGCAGGCTCTGCAGTTG
GAG
AGCAAAGCCTTCGATGTCAGAGCAGGGGCATGGATAAACGGTACAGTACCTCTGGACAGTACCGTCG
GC
AACGACACGTTCTTTGTTATCACCTGGATGGTAAAAAAGCCAGAAATCATTCTTCAAGATCCAAAAGG
A
AAAAAATATACAACCTCAGATTTCCAAGATGATAAACTAAACATCCGGTCTGCTAGACTTCAAATACCG
GGC
ACTGCAGAGACAGGTACTTGGACTTACAGCATCACGGGTACCAAGTCTCAGTTGATTACAATGACAG
TG
ACCACTCGAGCAAGAAGTCCCACCATGGAACCACTCCTGGCTACTGCTCACATGAGTCAGAGCACAGC
C
CAGTACCCTAGCCGGATGATTGTGTACGCACGGGTCAGCCAAGGATTTTTGCCTGTTCTGGGAGCCAAT
GTC
ACAGCCCTCATAGAAGCTGAACATGGACATCAAGTCACCTTGGAGCTCTGGGACAATGGGGCAGGTG
CT
GATACTGTTAAAAATGATGGCATCTACACAAGATACTTTACAGATTATCATGGAAATGGTAGATACAG
C
CTAAAAGTGCGTGTCCAGGCACAAAGAAACAAAACCAGACTGAGCTTAAGACAGAAGAACAAGTCTTTA
TAT
ATACCTGGCTATGTGGAAAATGGTAAAATTGTACTGAATCCACCCAGACCAGATGTCCAAGAAGAAG
CC
ATAGAAGCTACAGTGGAAGACTTCAACAGAGTAACCTCTGGAGGGTCGTTTACTGTGTCTGGAGCGCC
C
CCTGATGGCGACCACGCTCGTGTGTTCCCACCAAGTAAAGTCACAGACCTGGAGGCTGAGTTTATAGGT
GAT
TATATTCACCTTACATGGACGGCCCCTGGCAAGGTTCTCGACAATGGAAGAGCACATAGATACATCA
TC
AGAATGAGCCAGCATCCTCTGGATCTCCAAGAAGATTTTAACAATGCTACTTTAGTGAATGCTTCCAG
T
CTGATACCTAAAGAAGCTGGCTCAAAAGAAACATTTAAATTCAAACCAGAAACTTTTAAAATAGCAAAT
GGC
ATCCAGCTCTACATTGCAATCCAGGCAGACAATGAAGCCAGTCTCACCTCTGAGGTCTCCAACATCG
CA
CAGGCTGTCAAGCTTACTTCTCTAGAAGATAGTATCTCTGCACTGGGTGATGATATTTCTGCAATCTC
T
ATGACAATTTGGGGGTTAACTGTGATTTTTAACTCTATTTTAAACTAG


Translation (902 aa):
MVPGLQVLLFLTLHLLQNTESSMVHLNSNGYEGVVIAINPSVPEDERLIPSIKEMVTQASTYLFEASQGR
V
YFRNISILVPMTWKSKPEYLMPKRESYDK
ADVIVADPHLQHGDDPYTLQYGQCGDRGQYIHFTPNFLLT
D
NLRIYGPR
GRVFVHEWAHLRWGVFDEYNVDQPFYMSRKNTIEATRCSTRITGTNVVHNCERGNCVTRAC
R
RDSKTRLYEPKCTFIPDKIQTAGASIMFMQNLNS
VVEFCTEKNHNAEAPNLQNKMCNRRSTWDVIKTSA
D
FQNAPPMRGTEAPPPPTFSLLKSRRRVVCLVLDKSGSMDK
EDRLIRMNQAAELYLTQIVEKESMVGLVT
F
DSAAHIQNYLIKITSSSDYQKITANLPQQASGGTSICHGLQAGFQ
AITSSDQSTSGSEIVLLTDGEDNG
I
RSCFEAVSRSGAIIHTIALGPSAARELETLSDMT
GGLRFYANKDLNSLIDAFSRISSTSGSVSQQALQL
E
SKAFDVRAGAWINGTVPLDSTVGNDTFFVITWMVKKPEIILQDPKGKKYTTSDFQDDKLNIRSARLQIP
G
TAE
TGTWTYSITGTKSQLITMTVTTRARSPTMEPLLATAHMSQSTAQYPSRMIVYARVSQGFLPVLGAN
V
TALIEAEHGHQVTLELWDNGA
GADTVKNDGIYTRYFTDYHGNGRYSLKVRVQAQRNKTRLSLRQKNKSL
Y
IPGYVEN
GKIVLNPPRPDVQEEAIEATVEDFNRVTSGGSFTVSGAPPDGDHARVFPPSKVTDLEAEFIG
D
YIHLTWTAPGKVLDNGR
AHRYIIRMSQHPLDLQEDFNNATLVNASSLIPKEAGSKETFKFKPETFKIAN
G
IQLYIAIQADNEASLTSEVSNIAQAVKLTSLEDSISALGDDISAISMTIWGLTVIFNSILN




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser