NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17887.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17887.1 Public Mus musculus 3 Clca3a2 23 108 98 CCDS HistoryNCBI Gene:80797Re-query CCDS DB by CCDS ID:17887.1Re-query CCDS DB by GeneID:80797See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17887.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029929.11 ENSMUSP00000029929.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029929.11Link to Ensembl Protein Viewer:ENSMUSP00000029929.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029929Re-query CCDS DB by Protein ID:ENSMUSP00000029929
Original member Current member NCBI NM_030601.3 NP_085104.1 Accepted alive Link to Nucleotide Sequence:NM_030601.3Link to Protein Sequence:NP_085104.1Re-query CCDS DB by Nucleotide ID:NM_030601Re-query CCDS DB by Protein ID:NP_085104Link to BLAST:NP_085104.1

Chromosomal Locations for CCDS 17887.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 144797479 144797822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144801943 144802182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144802932 144803099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144805676 144805940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144806282 144806506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144807316 144807416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144808579 144808756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144810646 144810870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144813451 144813678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144813877 144814054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144816702 144816810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144817150 144817297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144817923 144818063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144819311 144819469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2709 nt):
ATGGTGCCAGGGCTGCAGGTCCTTCTGTTCCTCACCCTGCATCTCCTGCAGAACACAGAGAGCTCCATGG
TGCATCTCAACAGCAATGGATACGAGGGTGTGGTCATTGCCATTAACCCCAGTGTGCCAGAGGACGAAAG
GCTCATCCCAAGCATAAAGGAAATGGTAACTCAAGCTTCTACCTACCTGTTTGAAGCCAGCCAAGGAAGA
GTTTATTTCAGGAACATAAGCATATTAGTCCCGATGACCTGGAAGTCAAAATCTGAGTACTTAATGCCAA
AACGAGAATCGTACGACAAAGCAGACGTCATAGTTGCGGATCCTCACCTGCAACATGGAGACGACCCCTA
CACCCTTCAGTATGGACAGTGTGGGGACAGAGGACAGTACATACACTTCACTCCAAACTTCCTACTCACT
GATAACTTGCGTATCTATGGACCCCGAGGCAGAGTCTTTGTCCATGAGTGGGCCCATCTCCGGTGGGGAG
TATTTGATGAGTATAACGTGGACCGGCCTTTCTACATTTCTAGAAAGAACACTATAGAAGCAACAAGGTG
CTCCGCCAGCATCACAGGCAAGAAGGTGGTCCACGAGTGTCAGAGAGGCAGCTGTGTGACAAGGGCGTGC
CGGCGTGACTCGAAGACACGGCTGTATGAACCCAAATGTACATTTATCCCAGACAAAATACAGACAGCTG
GGGCCTCCATAATGTTCATGCAAAACCTCAATTCTGTGGTTGAATTTTGCACAGAAAATAACCACAATGC
AGAAGCCCCAAACCTACAAAACAAAATGTGCAATCGCAGAAGCACGTGGGATGTAATCAAGGCGTCTGCT
GACTTTCAGAATTCCCCTCCCATGAGAGGAACAGAAGCGCCTCCTCCACCTACATTTTCATTGCTCAAGT
CCAGAAGGCGAGTGGTGTGCTTGGTGCTGGATAAATCTGGAAGCATGGACAAAGAAGACCGTCTTATTCG
AATGAATCAAGCAGCAGAACTGTACTTAACTCAAATTGTGGAAAAGGAGTCTATGGTTGGATTAGTCACA
TTTGACAGCGCTGCCCACATCCAAAATTATCTAATAAAAATAACGAGTAGTAGTGACTACCAAAAGATCA
CCGCAAACCTCCCCCAACAGGCTACTGGTGGAACTTCAATTTGCCATGGACTCCAGGCAGGATTTCAGGC
AATTACCTCCAGTGACCAGAGCACTTCCGGTTCTGAGATCGTATTGCTGACAGATGGGGAAGATAATGGA
ATAAGTTCCTGCTTTGAGGCCGTCTCTCGCAGCGGTGCCATCATCCACACCATCGCTCTGGGGCCTTCTG
CTGCCCGAGAACTGGAGACTCTGTCAGACATGACAGGAGGGCTTCGTTTCTATGCCAACAAACATGTAAG
CAGCCTTATCGACGCTTTCAGTAGGATTTCATCTACAAGTGGCAGCGTCTCCCAGCAGGCTCTGCAGTTG
GAGAGCAAAGCCTTCAATGTCAGAGCAGGGGCATGGATAAACAGTACAGTACCTGTGGACAGTACCGTCG
GCAACGACACGTTCTTTGTTATCACCTGGACGGTACAAAAGCCAGAAATCATTCTTCAAGATCCAAAAGG
AAAAAAATATATAACCTCAGATTTCCAAGATGATGAACTAAACATCCGGTCTGCTCGACTTCAAATACCG
GGCACTGCAGAGACAGGTACTTGGACTTACAGCATCACGGGTACCAAGTCTCAGTTGATTACAATGACAG
TGACCACTCGAGCAAGAAGTCCCACCATGGAACCACTCCTGGCTACCGCTCACATGAGTCAGAGCACAGC
CCAGTACCCTAGCCGGATGATTGTGTATGTACGGGTCAGCCAAGGGTTTTTGCCTGTTCTAGGAGCCAAT
GTCACAGCCATCATAGAAGCTGAACATGGACATCAAGTCACCCTGGAGCTATGGGACAATGGGGCAGGTG
CTGATACTGTTAAAAATGATGGCATCTACACAAGATACTTTACAGATTATCATGGAAATGGTAGATACAG
CCTAAAAGTGCGTGTCCAGGCAAGAAAAAACAAAGCCAGACTAAGCTTAAGACAGAAGAACAAGTCTTTA
TATATACCTGGCTATGTGGAAAATGGTAAAATTGTACTGAATCCACCCAGACCAGATGTCCAAGAAGAAG
CCATAGAAGCTACAGTGGAGGACTTCAACAGAGTAACCTCTGGAGGGTCATTTACTGTGTCTGGAGCGCC
CCCTGATGGCGACCATGCTCGTGTGTTCCCACCAAGTAAAGTCACAGACCTGGAGGCTGAGTTTATAGGT
GATTATATTCAACTTACATGGACGGCCCCTGGCAAGGTTCTCGATAAGGGAAGAGCGCATAGATACATCA
TCAGAGTGAGCCAGCATCCTCTGGGTCTCCAAGAAGATTTTAACAATGCTACTTTAGTGAATGCTTCCAG
TCTGATACCTAAAGAGGCTGGCTCAAAAGAAACATTTAAATTCAAACCAGAAACTTTTAAAATAGCAAAT
GACACCCAGCTCTACATTGCAATCCAGGCATACAATGAAGCTGGTCTCACCTCTGAGGTCTCCAACATTG
CACAGGCTGTCAAGTTTACTTCTCTAGAAGATAGTATCTCTGCACTGGGTGCTGATATTTCTGCAATCTC
TATGACAGTTTGGGGGTTAGCTGTGATTTTTAACTCTATTTTAAACTAG

Translation (902 aa):
MVPGLQVLLFLTLHLLQNTESSMVHLNSNGYEGVVIAINPSVPEDERLIPSIKEMVTQASTYLFEASQGR
VYFRNISILVPMTWKSKSEYLMPKRESYDKADVIVADPHLQHGDDPYTLQYGQCGDRGQYIHFTPNFLLT
DNLRIYGPRGRVFVHEWAHLRWGVFDEYNVDRPFYISRKNTIEATRCSASITGKKVVHECQRGSCVTRAC
RRDSKTRLYEPKCTFIPDKIQTAGASIMFMQNLNSVVEFCTENNHNAEAPNLQNKMCNRRSTWDVIKASA
DFQNSPPMRGTEAPPPPTFSLLKSRRRVVCLVLDKSGSMDKEDRLIRMNQAAELYLTQIVEKESMVGLVT
FDSAAHIQNYLIKITSSSDYQKITANLPQQATGGTSICHGLQAGFQAITSSDQSTSGSEIVLLTDGEDNG
ISSCFEAVSRSGAIIHTIALGPSAARELETLSDMTGGLRFYANKHVSSLIDAFSRISSTSGSVSQQALQL
ESKAFNVRAGAWINSTVPVDSTVGNDTFFVITWTVQKPEIILQDPKGKKYITSDFQDDELNIRSARLQIP
GTAETGTWTYSITGTKSQLITMTVTTRARSPTMEPLLATAHMSQSTAQYPSRMIVYVRVSQGFLPVLGAN
VTAIIEAEHGHQVTLELWDNGAGADTVKNDGIYTRYFTDYHGNGRYSLKVRVQARKNKARLSLRQKNKSL
YIPGYVENGKIVLNPPRPDVQEEAIEATVEDFNRVTSGGSFTVSGAPPDGDHARVFPPSKVTDLEAEFIG
DYIQLTWTAPGKVLDKGRAHRYIIRVSQHPLGLQEDFNNATLVNASSLIPKEAGSKETFKFKPETFKIAN
DTQLYIAIQAYNEAGLTSEVSNIAQAVKFTSLEDSISALGADISAISMTVWGLAVIFNSILN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH