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Report for CCDS17955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17955.1 Public Mus musculus 4 Rab2a 23 108 98 CCDS HistoryNCBI Gene:59021Re-query CCDS DB by CCDS ID:17955.1Re-query CCDS DB by GeneID:59021See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17955.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060232.7 ENSMUSP00000057664.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060232.7Link to Ensembl Protein Viewer:ENSMUSP00000057664.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000060232Re-query CCDS DB by Protein ID:ENSMUSP00000057664
Original member NCBI NM_021518.3 NP_067493.1 Updated not alive Link to Nucleotide Sequence:NM_021518.3Link to Protein Sequence:NP_067493.1Re-query CCDS DB by Nucleotide ID:NM_021518Re-query CCDS DB by Protein ID:NP_067493
Current member NCBI NM_021518.4 NP_067493.1 Accepted alive Link to Nucleotide Sequence:NM_021518.4Link to Protein Sequence:NP_067493.1Re-query CCDS DB by Nucleotide ID:NM_021518Re-query CCDS DB by Protein ID:NP_067493Link to BLAST:NP_067493.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067493.1 212 P53994 212 100% 0 0

Chromosomal Locations for CCDS 17955.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 8535863 8535908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8561152 8561223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8572526 8572593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8577955 8578037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8578471 8578563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8582382 8582493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8604374 8604442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8606408 8606503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGGCGTACGCCTATCTCTTCAAGTACATCATCATCGGCGACACAGGTGTTGGTAAATCGTGCTTATTGC
TACAGTTTACAGACAAGAGGTTTCAGCCGGTGCATGACCTCACAATTGGTGTAGAGTTTGGTGCTCGGAT
GATAACGATTGATGGGAAACAGATAAAACTCCAGATCTGGGATACAGCAGGGCAGGAGTCCTTTCGTTCT
ATCACACGGTCATATTACAGAGGTGCAGCGGGGGCTTTACTAGTGTATGATATTACAAGGAGAGACACGT
TCAACCACTTGACAACCTGGTTAGAAGATGCCCGTCAGCATTCCAATTCCAACATGGTCATCATGCTTAT
TGGAAATAAAAGTGACTTAGAATCTAGGAGAGAAGTGAAAAAGGAAGAAGGTGAAGCTTTTGCACGAGAG
CATGGACTTATCTTCATGGAAACTTCTGCCAAGACTGCGTCTAATGTAGAGGAGGCATTTATTAACACAG
CAAAAGAAATTTATGAAAAAATCCAAGAAGGGGTCTTTGACATTAATAATGAGGCAAACGGCATTAAAAT
TGGCCCTCAGCACGCTGCTACCAACGCATCTCATGGAAGCAACCAAGGCGGACAGCAGGCAGGGGGAGGC
TGCTGTTGA

Translation (212 aa):
MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRS
ITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFARE
HGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNASHGSNQGGQQAGGG
CC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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