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Report for CCDS17993.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17993.1 Public Mus musculus 4 Slc7a13 23 108 98 CCDS HistoryNCBI Gene:74087Re-query CCDS DB by CCDS ID:17993.1Re-query CCDS DB by GeneID:74087See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17993.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035890.7 ENSMUSP00000036228.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035890.7Link to Ensembl Protein Viewer:ENSMUSP00000036228.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035890Re-query CCDS DB by Protein ID:ENSMUSP00000036228
Original member Current member NCBI NM_028746.3 NP_083022.1 Accepted alive Link to Nucleotide Sequence:NM_028746.3Link to Protein Sequence:NP_083022.1Re-query CCDS DB by Nucleotide ID:NM_028746Re-query CCDS DB by Protein ID:NP_083022Link to BLAST:NP_083022.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083022.1 478 Q91WN3 478 100% 0 0

Chromosomal Locations for CCDS 17993.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 19818802 19819492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19823924 19824055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19839222 19839583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19841340 19841591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGGCAATGGATTCAAAGAAGGAAATCCGTCTTAAGAGAGAACTTGGATATTTCTGGGGGACAAACTTTT
TAATTATTAATATAATTGGTGCAGGAATATTTGTGTCCCCCAAGGGAGTGCTCCAGCACTCTTCCATGAA
TGTTGGAGTCTCCTTGTGTGTTTGGGCTGTCTGTGCAGTGCTGACCTTGACCAGTGCTCTCTGCTCTGCA
GAGATCGGGATAACCTTCCCATACAGTGGGGCTCACTATTATTTTTTAAAGCGATGCTTCGGCCCTCTCG
TGGCATTCCTGAGGCTTTGGACTAGCTTGTTTCTCGGCCCAGGCTTAATTGCTAGCCAAGCTCTGCTACT
GGCTGAGTATGGCGTTCAGCCTTTTTATCCCAGCTGCTCTGCCCCGATTCTACCAAGAAAATGTCTGGCC
CTGGCGATGCTGTGGATTGTGGGAATTCTGAATTCTCGTGGTGTAAAAGAGCTGTCATGGCTTCAGACAG
TGAGCTCAGTGCTGAAGGTGGGCATACTCGGTGTCATTTCCCTCAGCGGCCTGTTCTTGCTGGTGAGAGG
GAAGAAGGAGAATGTACAAAGGCTTCAGAATGCGTTTGATGCCGAGTTCCCAGAGGTCTCTCAGTTAATA
GAAGCTATTTTCCAAGGATACTTTGCGTTTTCTGGCGGGGGATGCTTTACATGTATAGCAGGGGAGCTGA
AGAAACCCAGTAAAACAATTCCTAGATGCATCTTTACAGGACTGCCTCTGGTAACTGTCGTGTACTTACT
GGCTAATATTTCCTACCTGACAGTTCTGACACCCCAGGAAATGCTCTCTTCAGATGCTGTTGCTCTTACA
TGGACAGACAGGGTCATTCCCCAATTCACATGGACTGTTCCTTTTGCTATTTCTGCTTCACTGTTTATCA
ACCTTGTGATTAATGTACTTGAGACATCAAGAGTGTTATATATTGCAAGTGAGAATGGCCAGCTGCCTTT
GTTGTTTTGTGCCCTGAATGTCCATTCCTCTCCCTTTATAGCTGTGCTACTAATTATCAGTATGGCATCC
ATTTTAATTGTCTTAACAAACCTAATTGATCTGATAAACTATCTCTATTTTGTTGTTTCCATTTGGACTG
CCTTATCAATAATAGGAATCTTGAAACTGAGGTACCAAGAGCCCAATCTACACAGACCATATAAGGTGTT
TTTACCGTTCACATTCATAGCGTTGGGCATCACCCTGAGCTTGGTTTTGATCCCGCTTGTCAAGTCTCCA
AAGTTGCATTATATCTATGTGTTCCTCTTCCTTCTCAGTGGGCTGGTGTTTTACGTGCCATTGATACACT
TTAAAGTGAAGTTCGTTTGGTTTCAGAAGTTGACTTGCTATCTGCAGTTACTGTTTAATATTTGCATCCC
TGATGTGTCTGATGACCACATACATGAAGAAAGTTGA

Translation (478 aa):
MAMDSKKEIRLKRELGYFWGTNFLIINIIGAGIFVSPKGVLQHSSMNVGVSLCVWAVCAVLTLTSALCSA
EIGITFPYSGAHYYFLKRCFGPLVAFLRLWTSLFLGPGLIASQALLLAEYGVQPFYPSCSAPILPRKCLA
LAMLWIVGILNSRGVKELSWLQTVSSVLKVGILGVISLSGLFLLVRGKKENVQRLQNAFDAEFPEVSQLI
EAIFQGYFAFSGGGCFTCIAGELKKPSKTIPRCIFTGLPLVTVVYLLANISYLTVLTPQEMLSSDAVALT
WTDRVIPQFTWTVPFAISASLFINLVINVLETSRVLYIASENGQLPLLFCALNVHSSPFIAVLLIISMAS
ILIVLTNLIDLINYLYFVVSIWTALSIIGILKLRYQEPNLHRPYKVFLPFTFIALGITLSLVLIPLVKSP
KLHYIYVFLFLLSGLVFYVPLIHFKVKFVWFQKLTCYLQLLFNICIPDVSDDHIHEES


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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