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Report for CCDS18139.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18139.1 Public Mus musculus 4 Aldh1b1 23 108 98 CCDS HistoryNCBI Gene:72535Re-query CCDS DB by CCDS ID:18139.1Re-query CCDS DB by GeneID:72535See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18139.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044384.4 ENSMUSP00000041260.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044384.4Link to Ensembl Protein Viewer:ENSMUSP00000041260.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000044384Re-query CCDS DB by Protein ID:ENSMUSP00000041260
Original member Current member NCBI NM_028270.4 NP_082546.1 Accepted alive Link to Nucleotide Sequence:NM_028270.4Link to Protein Sequence:NP_082546.1Re-query CCDS DB by Nucleotide ID:NM_028270Re-query CCDS DB by Protein ID:NP_082546Link to BLAST:NP_082546.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082546.1 519 Q9CZS1 519 100% 0 0

Chromosomal Locations for CCDS 18139.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 45802464 45804023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGCTGACTGCCCGACTCTTGCTGCCCCGGCTCCTCTGCCTCCAGGGCAGGACTACCTCTTACTCTACAG
CAGCTGCTCTCCCGAACCCAATCCCAAACCCAGAGATTTGCTACAACAAGCTGTTCATCAACAACGAGTG
GCATGATGCGGTCAGCAAAAAGACCTTCCCCACAGTGAACCCCACTACAGGTGAGGTCATTGGGCATGTG
GCCGAAGGTGACCGGGCAGATGTGGATCTGGCTGTAAAAGCAGCCCGAGAAGCCTTCCGCCTGGGGTCCC
CATGGCGCAGGATGGATGCCTCAGAGCGGGGCCGGCTGCTGAACCGCCTAGCTGATCTTGTGGAACGAGA
TCGAGTGTACTTGGCCTCACTGGAGACGCTAGATAACGGGAAACCTTTCCAGGAGTCTTATGTCTTGGAT
CTGGATGAAGTCATCAAGGTGTACCGTTACTTCGCTGGCTGGGCTGACAAGTGGCATGGTAAGACCATCC
CTATGGATGGTGAGCATTTCTGCTTCACCCGACATGAGCCAGTGGGTGTCTGTGGCCAGATAATCCCTTG
GAACTTCCCACTGGTCATGCAGGGCTGGAAGCTGGCCCCGGCACTCGCCACGGGCAACACTGTGGTCATG
AAGGTGGCAGAGCAGACCCCACTCTCTGCTCTGTACTTGGCCTCCCTCATCAAAGAGGCGGGGTTTCCCC
CAGGAGTGGTGAACATCATCACTGGCTACGGCCCCACGGCGGGAGCTGCCATCGCTCAGCACATGGATGT
GGATAAAGTCGCCTTCACGGGCTCCACTGAGGTAGGCCACCTGATTCAGAAGGCAGCTGGCGAGTCTAAC
CTCAAGAGAGTCACCCTGGAGCTGGGTGGGAAGAGCCCCAGCATTGTGCTGGCAGACGCTGACATGGAGC
ATGCCGTAGATCAGTGTCACGAAGCCCTTTTCTTCAACATGGGCCAGTGCTGCTGTGCAGGCTCCCGGAC
ATTCGTGGAAGAGTCCATCTACCGTGAGTTTCTCGAGAGAACTGTGGAGAAGGCCAAGCAGAGGAAAGTG
GGGAACCCCTTTGAGTTGGACACCCAGCAGGGACCTCAGGTGGACAAGGAGCAGTTTGAACGAATCCTGG
GCTACATCCGGCTGGGACAGAAGGAAGGGGCAAAGCTTCTCTGTGGCGGGGAGCGTTTGGGGGAGCGCGG
CTTCTTCATCAAACCCACAGTCTTCGGGGACGTTCAGGATGGCATGAGGATCGCCAAGGAGGAGATCTTT
GGGCCCGTGCAGCCTCTGTTCAAGTTCAAGAAGATCGAGGAAGTAATCCAGAGAGCCAACAACACCAGGT
ATGGCCTGGCTGCGGCTGTGTTCACCCGAGACCTGGACAAGGCCATCTACTTCACGCAGGCCCTGCAAGC
TGGGACGGTGTGGGTGAACACCTATAACATTGTCACCTGCCACACGCCATTCGGAGGCTTTAAGGAATCT
GGCAATGGCAGGGAGCTGGGGGAGGACGGGCTCAGAGCCTACACGGAGGTGAAGACTGTCACCATCAAGG
TTCCCGAGAAGAATTCCTGA

Translation (519 aa):
MLTARLLLPRLLCLQGRTTSYSTAAALPNPIPNPEICYNKLFINNEWHDAVSKKTFPTVNPTTGEVIGHV
AEGDRADVDLAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYVLD
LDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGVCGQIIPWNFPLVMQGWKLAPALATGNTVVM
KVAEQTPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAAIAQHMDVDKVAFTGSTEVGHLIQKAAGESN
LKRVTLELGGKSPSIVLADADMEHAVDQCHEALFFNMGQCCCAGSRTFVEESIYREFLERTVEKAKQRKV
GNPFELDTQQGPQVDKEQFERILGYIRLGQKEGAKLLCGGERLGERGFFIKPTVFGDVQDGMRIAKEEIF
GPVQPLFKFKKIEEVIQRANNTRYGLAAAVFTRDLDKAIYFTQALQAGTVWVNTYNIVTCHTPFGGFKES
GNGRELGEDGLRAYTEVKTVTIKVPEKNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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