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Report for CCDS18227.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18227.1 Public Mus musculus 4 Slc46a2 23 108 98 CCDS HistoryNCBI Gene:30936Re-query CCDS DB by CCDS ID:18227.1Re-query CCDS DB by GeneID:30936See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18227.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030081.1 ENSMUSP00000030081.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030081.1Link to Ensembl Protein Viewer:ENSMUSP00000030081.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000030081Re-query CCDS DB by Protein ID:ENSMUSP00000030081
Original member Current member NCBI NM_021053.4 NP_066395.3 Accepted alive Link to Nucleotide Sequence:NM_021053.4Link to Protein Sequence:NP_066395.3Re-query CCDS DB by Nucleotide ID:NM_021053Re-query CCDS DB by Protein ID:NP_066395Link to BLAST:NP_066395.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066395.3 479 Q8CA03 479 100% 0 0

Chromosomal Locations for CCDS 18227.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 59906384 59906450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59911838 59911994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59912555 59912638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59913790 59914921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGGGTCCAGGGGGCACCTGTCCGTGGAGCAGCCGGCTCTCTGGCTTCCGGGTGAGGACTTGGATTGAGC
CTGTGGTGGCCTCAACCCAGGTGGCCGGCTCCCTCTACGACGCAGGACTACTCCTGGTAGTGAAGGAGTC
CTTCAAGTCTGAGGCTGGAGGCTCCTCTAATTACAGTGCCAACCAGTCGCTGGTGGAGTATCAGGAAGAC
CAACAGCAGAAGGCTATCTCCAATTTCAACATCATTTACAACCTCGTGCTGGGCCTGACGCCTCTGCTGT
CCGCCTATGGACTGGGCTGGCTCAGTGACCGCTACCACCGTAAGATCTCTATCTGCACAGCGATGCTGGG
CTTCCTGCTGTCCCGCATCGGACTCTTACTCAAAGTGATGCTGGACTGGCCAGTGGAGGTGATGTACGGA
GCAGCAGCGCTCAATGGGCTATGCGGGAGCTTCTCCGCTTATTGGTCCGGGGTCATGGCGCTGGGATCCC
TGGGCTGCTCCGAAGGCCGCCGCTCCGTGCGCCTCATCCTCATCGATTTAGTCCTGGGCTTGGCTGGGTT
CTCTGGGAGCATGGCTTCGGGGCATCTCTTCAAGCAAATCGTTGGGCACTCTGCGCAAGGCCTCCTGTTA
ACTGCCTGCAGCGTTGGCTGTGCGGCGTTTGCCCTTTTCTACAGCCTCTTTGTGCTGAAGGTCCCTGAGT
CCAAGCCCAACAAGGTGCACCCCACTGTAGATACTGTGTCTGGCATGATGGGCACCTATCGAACCCTGGA
TCCAGATCAACAAGACAAACAGAATGTACCAAGGAACCCTCGGACTCCTGGGAAAGGGAAGTCTTCCCAA
AGGGAAGTTGTTGCTCTGCTGTTTGTGGGTGCCATCATCTATGACCTGGCTGCTGTGGGCACAGTAGACG
TCATGGCCCTTTTTGTGCTTAAGGAGCCTCTCCATTGGAACCAAGTGCAGCTGGGCTATGGGATGGCTTC
TGGGTACATAATCTTCATAACCAGCTTCTTGGGTGTCTTGGTTTTCTCCCGCTGCTTCCGGGACACCACG
ATGATCATAATCGGGATGCTTTCCTTTGGGTCCGGAGCCCTTCTCTTGGCCTTTGTGAAGGAGACATACA
TGTTCTACATTGCCCGAGCCATCATGCTGTTTGCGCTTATTCCGATCACAACCATCAGGTCAGCCATGTC
CAAACTCATAAAGGACTCTTCCTATGGAAAGATTTTCGTCATACTACAGCTGTGCCTAACTCTGACTGGG
GTGGTGACATCCACCATATATAACAAGATCTATCAGCTTACGCTGGACAAGTTCATTGGCACCTGCTTTG
TTCTATCATCTTTTCTCTCCTTCTTGGCCATTGTCCCAATTGGTGTTGTGGCCTACAAACAAGTCCCGAG
GTCACAACAAGGAGAGTGTGCAGAGAAACAGAGGAGCTGA

Translation (479 aa):
MGPGGTCPWSSRLSGFRVRTWIEPVVASTQVAGSLYDAGLLLVVKESFKSEAGGSSNYSANQSLVEYQED
QQQKAISNFNIIYNLVLGLTPLLSAYGLGWLSDRYHRKISICTAMLGFLLSRIGLLLKVMLDWPVEVMYG
AAALNGLCGSFSAYWSGVMALGSLGCSEGRRSVRLILIDLVLGLAGFSGSMASGHLFKQIVGHSAQGLLL
TACSVGCAAFALFYSLFVLKVPESKPNKVHPTVDTVSGMMGTYRTLDPDQQDKQNVPRNPRTPGKGKSSQ
REVVALLFVGAIIYDLAAVGTVDVMALFVLKEPLHWNQVQLGYGMASGYIIFITSFLGVLVFSRCFRDTT
MIIIGMLSFGSGALLLAFVKETYMFYIARAIMLFALIPITTIRSAMSKLIKDSSYGKIFVILQLCLTLTG
VVTSTIYNKIYQLTLDKFIGTCFVLSSFLSFLAIVPIGVVAYKQVPRSQQGECAEKQRS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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