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Report for CCDS18237.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18237.1 Public Mus musculus 4 Slc31a1 23 108 98 CCDS HistoryNCBI Gene:20529Re-query CCDS DB by CCDS ID:18237.1Re-query CCDS DB by GeneID:20529See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18237.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084526.11 ENSMUSP00000081574.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084526.11Link to Ensembl Protein Viewer:ENSMUSP00000081574.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000084526Re-query CCDS DB by Protein ID:ENSMUSP00000081574
Original member Current member NCBI NM_175090.4 NP_780299.2 Accepted alive Link to Nucleotide Sequence:NM_175090.4Link to Protein Sequence:NP_780299.2Re-query CCDS DB by Nucleotide ID:NM_175090Re-query CCDS DB by Protein ID:NP_780299Link to BLAST:NP_780299.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780299.2 196 Q8K211 196 100% 0 0

Chromosomal Locations for CCDS 18237.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 62385532 62385678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62386091 62386163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62387867 62388035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62388598 62388799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGAACCATATGGGGATGAACCATATGGAGATGCACCACCATATGGGTATGAACCACACGGACGACAACA
TTACCATGCCACCTCACCACCACCCGACCACCTCAGCCTCACACTCCCACGGTGGAGGGGACAGCATGAT
GATGATGCCTATGACCTTCTACTTTGACTTTAAGAATGTGAATCTATTGTTTTCCGGTTTGGTAATCAAT
ACACCTGGAGAAATGGCTGGAGCCTTCGTGGCAGTGTTTTTACTAGCAATGTTTTATGAAGGACTCAAGA
TAGCCCGAGAGGGTCTGCTTCGAAAGTCTCAAGTCAGCATTCGCTACAATTCCATGCCTGTCCCAGGACC
AAATGGAACCATCCTAATGGAGACACACAAAACTGTTGGGCAGCAGATGCTGAGCTTCCCCCACCTCCTG
CAGACAGTGCTGCACATCATCCAGGTAGTCATCAGCTACTTCCTCATGCTCATCTTCATGACCTACAATG
GGTACCTATGCATTGCAGTAGCAGCAGGGGCTGGGACGGGATACTTTCTCTTCAGCTGGAAGAAGGCAGT
GGTGGTGGACATCACAGAGCACTGCCATTGA

Translation (196 aa):
MNHMGMNHMEMHHHMGMNHTDDNITMPPHHHPTTSASHSHGGGDSMMMMPMTFYFDFKNVNLLFSGLVIN
TPGEMAGAFVAVFLLAMFYEGLKIAREGLLRKSQVSIRYNSMPVPGPNGTILMETHKTVGQQMLSFPHLL
QTVLHIIQVVISYFLMLIFMTYNGYLCIAVAAGAGTGYFLFSWKKAVVVDITEHCH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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