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Report for CCDS18533.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18533.1 Public Mus musculus 4 Tmem53 23 108 98 CCDS HistoryNCBI Gene:68777Re-query CCDS DB by CCDS ID:18533.1Re-query CCDS DB by GeneID:68777See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18533.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062824.11 ENSMUSP00000061523.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062824.11Link to Ensembl Protein Viewer:ENSMUSP00000061523.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000062824Re-query CCDS DB by Protein ID:ENSMUSP00000061523
Original member Current member NCBI NM_026837.3 NP_081113.1 Accepted alive Link to Nucleotide Sequence:NM_026837.3Link to Protein Sequence:NP_081113.1Re-query CCDS DB by Nucleotide ID:NM_026837Re-query CCDS DB by Protein ID:NP_081113Link to BLAST:NP_081113.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081113.1 276 Q9D0Z3-1 276 100% 0 0

Chromosomal Locations for CCDS 18533.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 117252074 117252134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117265860 117265975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117267890 117268543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGGCCTCGGCCGAGCTGGATTACAGCATCGAGATCCCGGATCAGCCCTGCTGGAGCCAGAAGAACAGAC
AAGGTGGGAAGGAAGCTGGGAAGCAACAGCCTGTGGTGATTCTCTTGGGCTGGGGAGGCTGCAGGGACAA
GAACCTGGCCAAGTATAGTGCTATCTACCACAAAAGGGGCTGCATTGTGATCCGATACACGGCCCCCTGG
CACATGGTCTTCTTCTCTGAGTCCTTGGGCATCCCTTCACTTCGCGTGATAGCCCAGAAACTGCTGGAGC
TCCTCTTTGACTATGAGATTGAGCGGGAGCCTCTGCTCTTCCACGTCTTCAGCAATGCCGGCGTCATGCT
CTACCGCTACGTGCTGGAGCTCCTACAGACCCACCAGCGCTTCCGCCATTTGCATGTGGTGGGCACCATC
TTTGACAGTGGTCCTGGCGATAGCAACCTGATAGGGGCCCTGAGGGCTCTGGCAACCATCCTGGAGCGCC
GACCTGCGGTGCTGCGCCTGTTGCTCCTGGCAGCATTTGCCCTGGTGGTGATCCTGTTTCACTTCCTGCT
TGCTCCATTCACTGCCCTCTTCCACACCCACTTCTACGACAGGCTGCAGGACTCAGGCTCCTGCTGGCCT
GAACTCTACCTCTACTCTAGAGCTGATAAGGTGGTCTCGGCCAGGGATGTGGAACGTATGGTAGAGGCAC
GCCTGGCTCACCAGGTCATGGTGCGTGGAGTGGACTTTGTGTCATCTGCGCATGTCAGCCACCTCCGAGA
CTATCCTACTTACTATACAAGTCTGTGTGTTGACTTCATGCATAATTGTGTCCAATGCTGA

Translation (276 aa):
MASAELDYSIEIPDQPCWSQKNRQGGKEAGKQQPVVILLGWGGCRDKNLAKYSAIYHKRGCIVIRYTAPW
HMVFFSESLGIPSLRVIAQKLLELLFDYEIEREPLLFHVFSNAGVMLYRYVLELLQTHQRFRHLHVVGTI
FDSGPGDSNLIGALRALATILERRPAVLRLLLLAAFALVVILFHFLLAPFTALFHTHFYDRLQDSGSCWP
ELYLYSRADKVVSARDVERMVEARLAHQVMVRGVDFVSSAHVSHLRDYPTYYTSLCVDFMHNCVQC


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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