NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18594.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18594.1 Public Mus musculus 4 Nfyc 23 108 98 CCDS HistoryNCBI Gene:18046Re-query CCDS DB by CCDS ID:18594.1Re-query CCDS DB by GeneID:18046See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18594.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043429.11 ENSMUSP00000047441.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043429.11Link to Ensembl Protein Viewer:ENSMUSP00000047441.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000043429Re-query CCDS DB by Protein ID:ENSMUSP00000047441
Original member Current member EBI ENSMUST00000097906.11 ENSMUSP00000095516.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097906.11Link to Ensembl Protein Viewer:ENSMUSP00000095516.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000097906Re-query CCDS DB by Protein ID:ENSMUSP00000095516
Original member Current member EBI ENSMUST00000118902.7 ENSMUSP00000112610.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118902.7Link to Ensembl Protein Viewer:ENSMUSP00000112610.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118902Re-query CCDS DB by Protein ID:ENSMUSP00000112610
Original member Current member EBI ENSMUST00000120779.7 ENSMUSP00000112810.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120779.7Link to Ensembl Protein Viewer:ENSMUSP00000112810.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120779Re-query CCDS DB by Protein ID:ENSMUSP00000112810
Original member NCBI NM_001048168.2 NP_001041633.1 Updated not alive Link to Nucleotide Sequence:NM_001048168.2Link to Protein Sequence:NP_001041633.1Re-query CCDS DB by Nucleotide ID:NM_001048168Re-query CCDS DB by Protein ID:NP_001041633
Current member NCBI NM_001048168.3 NP_001041633.1 Accepted alive Link to Nucleotide Sequence:NM_001048168.3Link to Protein Sequence:NP_001041633.1Re-query CCDS DB by Nucleotide ID:NM_001048168Re-query CCDS DB by Protein ID:NP_001041633Link to BLAST:NP_001041633.1
Original member NCBI NM_001357192.1 NP_001344121.1 Updated not alive Link to Nucleotide Sequence:NM_001357192.1Link to Protein Sequence:NP_001344121.1Re-query CCDS DB by Nucleotide ID:NM_001357192Re-query CCDS DB by Protein ID:NP_001344121
Current member NCBI NM_001357192.2 NP_001344121.1 Accepted alive Link to Nucleotide Sequence:NM_001357192.2Link to Protein Sequence:NP_001344121.1Re-query CCDS DB by Nucleotide ID:NM_001357192Re-query CCDS DB by Protein ID:NP_001344121Link to BLAST:NP_001344121.1
Original member NCBI NM_001357193.1 NP_001344122.1 Updated not alive Link to Nucleotide Sequence:NM_001357193.1Link to Protein Sequence:NP_001344122.1Re-query CCDS DB by Nucleotide ID:NM_001357193Re-query CCDS DB by Protein ID:NP_001344122
Current member NCBI NM_001357193.2 NP_001344122.1 Accepted alive Link to Nucleotide Sequence:NM_001357193.2Link to Protein Sequence:NP_001344122.1Re-query CCDS DB by Nucleotide ID:NM_001357193Re-query CCDS DB by Protein ID:NP_001344122Link to BLAST:NP_001344122.1
Original member NCBI NM_001357194.1 NP_001344123.1 Updated not alive Link to Nucleotide Sequence:NM_001357194.1Link to Protein Sequence:NP_001344123.1Re-query CCDS DB by Nucleotide ID:NM_001357194Re-query CCDS DB by Protein ID:NP_001344123
Current member NCBI NM_001357194.2 NP_001344123.1 Accepted alive Link to Nucleotide Sequence:NM_001357194.2Link to Protein Sequence:NP_001344123.1Re-query CCDS DB by Nucleotide ID:NM_001357194Re-query CCDS DB by Protein ID:NP_001344123Link to BLAST:NP_001344123.1
Original member NCBI NM_008692.4 NP_032718.2 Updated not alive Link to Nucleotide Sequence:NM_008692.4Link to Protein Sequence:NP_032718.2Re-query CCDS DB by Nucleotide ID:NM_008692Re-query CCDS DB by Protein ID:NP_032718
Current member NCBI NM_008692.5 NP_032718.2 Accepted alive Link to Nucleotide Sequence:NM_008692.5Link to Protein Sequence:NP_032718.2Re-query CCDS DB by Nucleotide ID:NM_008692Re-query CCDS DB by Protein ID:NP_032718Link to BLAST:NP_032718.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001041633.1 335 P70353 335 100% 0 0
NP_001344121.1 335 P70353 335 100% 0 0
NP_001344122.1 335 P70353 335 100% 0 0
NP_001344123.1 335 P70353 335 100% 0 0
NP_032718.2 335 P70353 335 100% 0 0

Chromosomal Locations for CCDS 18594.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 120758177 120758296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120759332 120759391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120761628 120761735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120765214 120765372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120768726 120768899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120773672 120773767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120779120 120779233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120781472 120781543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120790377 120790481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGTCCACAGAAGGAGGGTTTGGCGGTACCAGCAGCAGTGATGCCCAGCAAAGCCTCCAGTCCTTCTGGC
CCAGAGTCATGGAAGAAATCCGAAACTTAACAGTGAAAGATTTCCGAGTACAGGAACTCCCACTGGCTCG
TATTAAGAAGATTATGAAACTGGATGAAGATGTGAAGATGATCAGTGCAGAAGCCCCTGTGCTGTTTGCT
AAGGCAGCCCAGATTTTTATCACTGAGCTGACTCTTCGAGCCTGGATCCACACAGAGGATAACAAGCGTC
GTACTCTTCAGAGGAATGATATTGCCATGGCAATTACAAAATTTGATCAGTTCGACTTTCTCATCGATAT
TGTTCCAAGAGATGAACTGAAACCTCCAAAGCGCCAGGAGGAGGTACGCCAGTCTGTGACTCCTGCGGAG
CCTGTCCAGTACTACTTCACGCTGGCTCAGCAGCCCACTGCTGTCCAGGTCCAGGGACAGCAGCAAGGCC
AGCAGACCACCAGTTCTACGACCACCATCCAGCCTGGACAGATCATCATTGCACAGCCTCAGCAGGGTCA
GACCACACCCGTGACCATGCAGGTTGGAGAAGGTCAGCAGGTGCAGATTGTACAGGCCCAACCTCAGGGT
CAGGCCCAGCAGACCCAGAGTGGCACTGGACAGACCATGCAGGTGATGCAGCAGATCATTACCAACACAG
GAGAGATCCAGCAGATCCCGGTGCAGCTGAATGCTGGCCAGCTGCAATATATCCGATTAGCCCAGCCTGT
ATCAGGCACCCAAGTTGTCCAAGGACAGATCCAGACACTTGCTACCAATGCCCAACAGATCACACAGACA
GAGGTCCAGCAAGGACAGCAGCAGTTCAGCCAGTTCACAGATGGACAGCAGCTGTACCAGATCCAGCAAG
TCACCATGCCTGCAGGCCAAGACCTCGCCCAGCCCATGTTTATTCAGTCAGCCAATCAGCCCTCTGATGG
GCAGACCCCCCAGGTGACTGGAGACTGA

Translation (335 aa):
MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFA
KAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAE
PVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQG
QAQQTQSGTGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQT
EVQQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDGQTPQVTGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH