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Report for CCDS18712.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18712.1 Public Mus musculus 4 Laptm5 23 108 98 CCDS HistoryNCBI Gene:16792Re-query CCDS DB by CCDS ID:18712.1Re-query CCDS DB by GeneID:16792See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18712.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000151698.7 ENSMUSP00000118415.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000151698.7Link to Ensembl Protein Viewer:ENSMUSP00000118415.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000151698Re-query CCDS DB by Protein ID:ENSMUSP00000118415
Original member Current member NCBI NM_010686.4 NP_034816.1 Accepted alive Link to Nucleotide Sequence:NM_010686.4Link to Protein Sequence:NP_034816.1Re-query CCDS DB by Nucleotide ID:NM_010686Re-query CCDS DB by Protein ID:NP_034816Link to BLAST:NP_034816.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034816.1 261 Q61168 261 100% 0 0

Chromosomal Locations for CCDS 18712.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 130913348 130913434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130926105 130926198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130926771 130926847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130928637 130928762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130929420 130929542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130930771 130930866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130932017 130932109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130934461 130934550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGGCCTCCCGTGCAGCGCCGGTCAGACAGACATGCTGTTGTTTCAACATCCGAGTCGCCACCATAGCCC
TGGCCATTTACCACATAGTCATGAGTGTCCTGCTGTTCATTGAGCATGTGGTGGAGGTGGCCCGCGGTAA
AGTGTCCTGTAGGTTCTTCAAGATGCCGTACCTCAGGATGGCTGACCTGCTCTCCAGCTTCCTGCTCATT
GGCGTGCTCTTCATCATCAGCATCAGCCTGCTGTTCGGCGTGGTCAAGAACCGGGAGAAGTACCTGATAC
CCTTCCTGTCCCTTCAAATCATGGACTTCCTGCTCTGCCTGCTCACACTGCTGGGCTCCTACATCGAATT
GCCAGCGTACTTGAAGCTTGCCCGGCCCCGGCCTGGTCCTTCTAAGGTCCCCTTGATGACACTGCAGCTG
CTAGACTTCTGTTTGAGTATCCTGACCCTGTGCAGCTCCTACATGGAAGTGCCCACCTACCTCAACTTCA
AGTCCATGAACCACATGAATTACCTCCCAAGCCAGGAGGGTGTGCCGCACAGCCAGTTCATCAACATGAT
GCTCATCTTCTCAGTGGCCTTTATCACCGTGCTCATCCTGAAGGTCTACATGTTCAAGTGTGTGTACACA
TGCTACAAATTCTTGAAGCACATGAATTCGGCCATGGAGGACAGCAGCTCCAAGATGTTCCTCAAGGTGG
CTCTGCCGTCCTACGAGGAAGCCTTGTCTCTGCCCCCTAAGACTCCAGAGGGGGACCCTGCACCACCCCC
ATACTCAGAAGTGTGA

Translation (261 aa):
MASRAAPVRQTCCCFNIRVATIALAIYHIVMSVLLFIEHVVEVARGKVSCRFFKMPYLRMADLLSSFLLI
GVLFIISISLLFGVVKNREKYLIPFLSLQIMDFLLCLLTLLGSYIELPAYLKLARPRPGPSKVPLMTLQL
LDFCLSILTLCSSYMEVPTYLNFKSMNHMNYLPSQEGVPHSQFINMMLIFSVAFITVLILKVYMFKCVYT
CYKFLKHMNSAMEDSSSKMFLKVALPSYEEALSLPPKTPEGDPAPPPYSEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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