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Report for CCDS1884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1884.1 Public Homo sapiens 2 DNAAF10 24 110 108 CCDS HistoryNCBI Gene:116143Re-query CCDS DB by CCDS ID:1884.1Re-query CCDS DB by GeneID:116143See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1884.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295121.11 ENSP00000295121.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295121.11Link to Ensembl Protein Viewer:ENSP00000295121.6Re-query CCDS DB by Nucleotide ID:ENST00000295121Re-query CCDS DB by Protein ID:ENSP00000295121
Original member Current member NCBI NM_138458.4 NP_612467.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138458.4Link to Protein Sequence:NP_612467.1Re-query CCDS DB by Nucleotide ID:NM_138458Re-query CCDS DB by Protein ID:NP_612467Link to BLAST:NP_612467.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612467.1 357 Q96MX6-1 357 100% 0 0

Chromosomal Locations for CCDS 1884.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 68131238 68131445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68134702 68134799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68137299 68137433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68138742 68138857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68141694 68141795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68144585 68144715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68147467 68147567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68157261 68157443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGTCGGCCTTCGAGAAGCCTCAGATCATCGCCCATATCCAGAAGGGCTTCAACTACACGGTGTTTGACT
GTAAGTGGGTGCCCTGCAGCGCCAAATTTGTGACCATGGGCAACTTCGCACGGGGCACCGGCGTCATTCA
GCTGTACGAGATCCAGCACGGGGACCTGAAGCTGCTTCGGGAGATTGAAAAGGCCAAACCTATTAAATGT
GGAACATTTGGTGCAACATCTTTACAGCAGAGATATTTAGCTACTGGAGATTTTGGTGGAAACCTTCATA
TATGGAATTTAGAAGCTCCAGAGATGCCAGTATATTCTGTAAAGGGCCATAAAGAAATTATAAATGCCAT
AGATGGCATAGGTGGACTAGGAATTGGAGAAGGAGCACCTGAAATTGTGACTGGCAGCCGAGATGGAACT
GTGAAGGTGTGGGACCCAAGGCAAAAAGATGATCCTGTTGCTAATATGGAACCTGTACAAGGAGAAAACA
AGAGAGACTGTTGGACTGTGGCATTTGGCAATGCTTATAATCAAGAAGAACGTGTTGTTTGTGCTGGCTA
TGACAATGGGGATATCAAACTATTTGATCTCAGAAATATGGCATTACGGTGGGAGACAAACATCAAAAAT
GGGGTGTGTAGCTTGGAGTTTGACAGAAAAGACATAAGTATGAATAAGTTAGTAGCCACATCTCTGGAAG
GAAAGTTCCATGTTTTTGACATGAGAACACAGCATCCAACCAAAGGTTTTGCCTCTGTTTCAGAAAAGGC
TCATAAATCTACTGTGTGGCAGGTCCGACACCTGCCGCAGAACAGGGAGCTCTTTCTGACAGCTGGAGGC
GCCGGCGGCCTTCACCTCTGGAAGTATGAATACCCTATTCAGCGGTCAAAGAAAGATTCTGAGGGAATAG
AAATGGGAGTCGCAGGTTCTGTAAGCCTTCTGCAGAATGTTACGTTGTCCACCCAGCCCATTTCAAGTTT
GGATTGGAGTCCAGATAAAAGGGGTCTCTGCGTCTGTAGTTCATTTGACCAAACGGTGAGAGTACTGATC
GTTACAAAGCTCAATAAAATTTGA

Translation (357 aa):
MSAFEKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKC
GTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT
VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKN
GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG
AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLI
VTKLNKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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