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Report for CCDS19287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19287.1 Public Mus musculus 5 Pi4k2b 23 108 98 CCDS HistoryNCBI Gene:67073Re-query CCDS DB by CCDS ID:19287.1Re-query CCDS DB by GeneID:67073See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19287.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031081.10 ENSMUSP00000031081.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031081.10Link to Ensembl Protein Viewer:ENSMUSP00000031081.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031081Re-query CCDS DB by Protein ID:ENSMUSP00000031081
Original member Current member NCBI NM_025951.3 NP_080227.2 Accepted alive Link to Nucleotide Sequence:NM_025951.3Link to Protein Sequence:NP_080227.2Re-query CCDS DB by Nucleotide ID:NM_025951Re-query CCDS DB by Protein ID:NP_080227Link to BLAST:NP_080227.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080227.2 469 Q8CBQ5-1 469 100% 0 0

Chromosomal Locations for CCDS 19287.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 52741719 52741968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52748369 52748505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52750608 52750808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52751422 52751553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52753096 52753249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52754637 52754704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52756866 52756965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52760874 52761007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52762432 52762491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52767583 52767756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGGCGGAGGCCTGCGAGCCCACCCGCCCCTCGGAGGACGAGGACGAGGAGCGGGAGCCGCTGCTGCCTC
GCGTTGCCTGGGCCCAGCCGCGGAGGGTCGCGCCCGGGAGCGCCGTGAGAATGCAGGCGGACGAGGGCGC
GGATGTCCTCCGCGAGCCCGCTACCGACGAGCCGCCGGCGGTGTCCGGGGAAGGGTCGATCTCCGCGAGC
TTGTCCACCGAGCTGGATCGGACCCGCACTACGAGCTCAGAAACAAATACATTCTTGGAAGATCCAGAAT
TTGCTGATATTGTATTGAAAGCAGAGCAAGCAATAGAAATTGGAGTTTTCCCAGAAAGAATTTCTCAAGG
GTCAAGTGGAAGTTACTTTGTAAAGGATTCTAAAAGGAATATTATTGGCGTGTTTAAACCCAAATCAGAA
GAGCCTTATGGCCAGCTGAACCCCAAGTGGACCAAGTACGTCCATAAGGTTTGCTGTCCCTGCTGCTTTG
GCCGAGGCTGCCTGCTTCCTAACCAGGGGTACCTTTCTGAAGCTGGTGCCTACCTGGTGGATGTCAAACT
TAATCTGGGTATTGTGCCTAAAACAAAGGTGGTTTGGCTTGTCAGTGAGACATTTAACTACAGTGCAATT
GACCGTGCAAAATCAAGAGGCAAAAAGTATGCCTTAGAGAAAGTGCCAAAAGTAGGCAGAAAGTTCCATC
GGATAGGACTTCCTCCTAAGGTTGGTTCCTTTCAGCTGTTTGTGAAAGATTACAAGGAGGCTGAGTATTG
GCTTAGGAGGTTTGAAGCGGAGCCTCTGCCCGAGAACATTAGAAAACAGTTTCAGTCACAGTTTGAAAAA
TTAGTGATTCTGGATTACATCATCAGGAACACAGACAGGGGAAATGATAACTGGCTAGTCAAATATGATG
AGATGAAGTATGCAAAGAAAATTGAAAGTGAGGAATCAAACTGGATTGATAATAAACAATTGCTTATTAA
AATAGCTGCAATTGATAATGGGCTAGCATTTCCCTTTAAGCATCCTGATGAATGGCGAGCATATCCATTT
CACTGGGCTTGGCTTCCTCAAGCAAAGGTTCCTTTTTCTGAAGAGACTCGAAACTTGATTCTACCCTATA
TTTCTGACATGAACTTTGTACAAGACTTGTGTGAAGATCTTTATGAACTTTTTAAGACTGACAAAGGATT
TGACAGAGCTGCTTTTGAAAATCAGATGTCTGTGATGAGAGGCCAGATCTTAAACCTCACTCAGGCACTG
AGAGACGGGAAGAGTCCTATGCAGCTGGCACAGATGCCATGTGTGATCGTGGAGTGCAGCAAAAGTGGCA
GCCAGGGCCGTGTGGTACACCTGGGCAGCTCCTTCACCCAGACGGTCCACTGCAGGAAACCGTTCTTCTC
CTCCTGGTAG

Translation (469 aa):
MAEACEPTRPSEDEDEEREPLLPRVAWAQPRRVAPGSAVRMQADEGADVLREPATDEPPAVSGEGSISAS
LSTELDRTRTTSSETNTFLEDPEFADIVLKAEQAIEIGVFPERISQGSSGSYFVKDSKRNIIGVFKPKSE
EPYGQLNPKWTKYVHKVCCPCCFGRGCLLPNQGYLSEAGAYLVDVKLNLGIVPKTKVVWLVSETFNYSAI
DRAKSRGKKYALEKVPKVGRKFHRIGLPPKVGSFQLFVKDYKEAEYWLRRFEAEPLPENIRKQFQSQFEK
LVILDYIIRNTDRGNDNWLVKYDEMKYAKKIESEESNWIDNKQLLIKIAAIDNGLAFPFKHPDEWRAYPF
HWAWLPQAKVPFSEETRNLILPYISDMNFVQDLCEDLYELFKTDKGFDRAAFENQMSVMRGQILNLTQAL
RDGKSPMQLAQMPCVIVECSKSGSQGRVVHLGSSFTQTVHCRKPFFSSW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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