NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19398.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19398.1 Public Mus musculus 5 Smr3a 23 108 98 CCDS HistoryNCBI Gene:20599Re-query CCDS DB by CCDS ID:19398.1Re-query CCDS DB by GeneID:20599See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19398.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031211.5 ENSMUSP00000031211.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031211.5Link to Ensembl Protein Viewer:ENSMUSP00000031211.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031211Re-query CCDS DB by Protein ID:ENSMUSP00000031211
Original member NCBI NM_011422.3 NP_035552.1 Updated not alive Link to Nucleotide Sequence:NM_011422.3Link to Protein Sequence:NP_035552.1Re-query CCDS DB by Nucleotide ID:NM_011422Re-query CCDS DB by Protein ID:NP_035552
Current member NCBI NM_011422.4 NP_035552.1 Accepted alive Link to Nucleotide Sequence:NM_011422.4Link to Protein Sequence:NP_035552.1Re-query CCDS DB by Nucleotide ID:NM_011422Re-query CCDS DB by Protein ID:NP_035552Link to BLAST:NP_035552.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035552.1 147 Q61900 147 100% 0 0

Chromosomal Locations for CCDS 19398.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 88004729 88004782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88008029 88008418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (444 nt):
ATGAAGCCACTCAATTTGGTCTTAGGCCTCTGCATTCTTGTAGGATGCTTCCTGTCCTGTGAGTGTCACA
GAGGCCCTAGAAGACATGATCCTAGAGGACCATTCCCTCCTCCTCCCCCTCCCCATGGTCCAGGAATTGG
TAGACCACACCCTCCACCCTTTGGTCCAGGAATTGGTAGACCACCCCCTCCACCCTTTGGTCCAGGAATT
GGTCGACCACCCCCTCCACCTCCTTGTCCACCAGTTCCTCCACATCCTAGACCTCCAAGCAATCCGTCTC
CTCCACCTACTCCAAGCATTCCTCCTACCGGACCTCCTACCACAGTACAAGCAACTACAATGCCAGCTGC
CAGTATCTCCATAACTACTCCTACTGCTAGAGATTCCACTGATATTTTTTGGAGGTTGTGGGAATTAATA
AATTCCCTTTTGCAGCAAGAATAA

Translation (147 aa):
MKPLNLVLGLCILVGCFLSCECHRGPRRHDPRGPFPPPPPPHGPGIGRPHPPPFGPGIGRPPPPPFGPGI
GRPPPPPPCPPVPPHPRPPSNPSPPPTPSIPPTGPPTTVQATTMPAASISITTPTARDSTDIFWRLWELI
NSLLQQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH