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Report for CCDS1955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1955.1 Public Homo sapiens 2 SEMA4F 24 110 108 CCDS HistoryNCBI Gene:10505Re-query CCDS DB by CCDS ID:1955.1Re-query CCDS DB by GeneID:10505See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1955.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357877.7 ENSP00000350547.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357877.7Link to Ensembl Protein Viewer:ENSP00000350547.2Re-query CCDS DB by Nucleotide ID:ENST00000357877Re-query CCDS DB by Protein ID:ENSP00000350547
Original member Current member NCBI NM_004263.5 NP_004254.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004263.5Link to Protein Sequence:NP_004254.2Re-query CCDS DB by Nucleotide ID:NM_004263Re-query CCDS DB by Protein ID:NP_004254Link to BLAST:NP_004254.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004254.2 770 O95754-1 770 100% 0 0

Chromosomal Locations for CCDS 1955.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 74654377 74654521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74656534 74656685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74657565 74657624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74657853 74657951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74662732 74662825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74673457 74673576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74673677 74673828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74674498 74674676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74674888 74675035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74675162 74675384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74675525 74675634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74675749 74675909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74679276 74679334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74679599 74680209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2313 nt):
ATGCCGGCCTCTGCTGCGCGGCCCCGCCCGGGTCCCGGGCAGCCTACAGCCTCGCCCTTCCCGCTACTGC
TGCTGGCGGTGCTGAGCGGCCCGGTATCCGGCCGCGTCCCCCGCTCGGTGCCCAGAACCTCGCTTCCAAT
CTCTGAGGCTGACTCCTGTCTCACCCGGTTCGCAGTCCCTCACACATACAATTACTCTGTTCTCCTTGTG
GATCCTGCCTCCCACACACTTTATGTTGGCGCCCGGGACACCATCTTCGCTTTATCCCTGCCCTTCTCAG
GGGAGAGACCCCGCAGGATTGACTGGATGGTTCCTGAGGCTCACAGACAGAACTGTAGGAAGAAAGGCAA
GAAAGAGGACGAATGTCACAATTTTGTCCAGATTCTCGCCATTGCCAATGCCTCTCACCTCCTCACTTGT
GGCACCTTCGCTTTTGATCCGAAGTGCGGGGTTATTGATGTGTCCAGGTTCCAGCAGGTTGAAAGACTTG
AGAGTGGCCGGGGGAAATGTCCTTTTGAGCCAGCTCAGCGGTCAGCAGCTGTAATGGCTGGGGGGGTCCT
CTATGCTGCCACTGTGAAAAACTACCTGGGGACGGAGCCAATTATCACCAGAGCAGTGGGTCGTGCCGAG
GACTGGATTCGGACAGATACCTTGCCTTCCTGGCTGAACGCCCCAGCCTTTGTCGCAGCCGTGGCCTTGA
GCCCAGCCGAATGGGGGGATGAAGATGGAGACGACGAAATCTACTTCTTCTTTACGGAGACTTCCCGAGC
ATTTGACTCATACGAGCGCATTAAAGTCCCACGGGTGGCCCGTGTGTGTGCGGGGGACCTCGGGGGCCGG
AAGACCCTCCAGCAGAGATGGACGACGTTTTTGAAAGCTGACCTGCTCTGTCCAGGGCCTGAGCATGGCC
GGGCCTCCAGTGTCCTGCAGGATGTTGCTGTGCTTCGACCTGAGCTTGGGGCAGGGACTCCCATCTTTTA
TGGCATCTTTTCTTCCCAGTGGGAGGGGGCTACTATCTCTGCTGTCTGTGCCTTCCGACCACAAGACATT
CGGACAGTGCTGAATGGTCCCTTCAGAGAACTAAAACATGACTGCAACAGAGGACTGCCTGTCGTGGACA
ATGATGTGCCCCAGCCCAGACCTGGAGAGTGCATCACCAACAACATGAAGCTCCGGCACTTTGGCTCATC
TCTCTCCCTGCCTGACCGCGTACTCACCTTCATCCGGGACCACCCACTCATGGACAGGCCAGTGTTTCCA
GCTGATGGCCACCCCCTGCTGGTCACTACAGATACAGCCTATCTCAGAGTCGTGGCCCACAGGGTGACCA
GCCTCTCAGGGAAAGAGTATGATGTGCTCTACCTGGGGACAGAGGATGGACACCTCCACCGAGCAGTGCG
GATCGGAGCTCAGCTCAGCGTTCTTGAAGATCTGGCCTTATTCCCAGAGCCACAGCCAGTTGAGAACATG
AAATTGTACCACAGCTGGCTCCTGGTTGGCTCCCGTACTGAGGTGACACAAGTGAATACAACCAACTGTG
GCCGTCTCCAGAGCTGCTCAGAGTGCATCCTGGCCCAGGACCCAGTCTGTGCCTGGAGCTTCCGGCTGGA
TGAGTGTGTGGCCCATGCCGGGGAGCACCGAGGGTTGGTCCAAGACATAGAGTCAGCAGATGTCTCCTCT
TTGTGTCCTAAAGAGCCTGGAGAACGTCCAGTAGTGTTTGAAGTTCCCGTGGCTACAGCTGCGCATGTGG
TCTTGCCATGTTCTCCAAGCTCAGCATGGGCATCCTGTGTGTGGCACCAGCCCAGTGGAGTGACTGCACT
CACCCCCCGGCGGGATGGACTGGAGGTGGTGGTGACCCCAGGGGCCATGGGCGCTTATGCCTGTGAATGT
CAGGAGGGTGGGGCAGCCCATGTGGTAGCAGCTTACAGCTTGGTATGGGGCAGCCAGCGAGATGCTCCGA
GCCGGGCCCACACAGTGGGGGCGGGACTGGCTGGCTTCTTCTTGGGGATTCTCGCAGCATCCCTGACTCT
CATTCTGATTGGTCGGCGTCAGCAGCGACGGCGACAGAGGGAACTTCTGGCTAGAGACAAGGTGGGCCTG
GACCTGGGGGCTCCACCTTCTGGGACCACAAGCTACAGCCAAGACCCTCCCTCCCCCTCTCCTGAAGATG
AGCGGTTGCCGCTGGCCCTGGCCAAGAGGGGCAGTGGCTTTGGTGGATTCTCACCACCCTTCCTGCTTGA
TCCTTGCCCAAGCCCAGCCCACATTCGGCTAACTGGGGCTCCTCTAGCCACATGTGATGAAACATCCATC
TAG

Translation (770 aa):
MPASAARPRPGPGQPTASPFPLLLLAVLSGPVSGRVPRSVPRTSLPISEADSCLTRFAVPHTYNYSVLLV
DPASHTLYVGARDTIFALSLPFSGERPRRIDWMVPEAHRQNCRKKGKKEDECHNFVQILAIANASHLLTC
GTFAFDPKCGVIDVSRFQQVERLESGRGKCPFEPAQRSAAVMAGGVLYAATVKNYLGTEPIITRAVGRAE
DWIRTDTLPSWLNAPAFVAAVALSPAEWGDEDGDDEIYFFFTETSRAFDSYERIKVPRVARVCAGDLGGR
KTLQQRWTTFLKADLLCPGPEHGRASSVLQDVAVLRPELGAGTPIFYGIFSSQWEGATISAVCAFRPQDI
RTVLNGPFRELKHDCNRGLPVVDNDVPQPRPGECITNNMKLRHFGSSLSLPDRVLTFIRDHPLMDRPVFP
ADGHPLLVTTDTAYLRVVAHRVTSLSGKEYDVLYLGTEDGHLHRAVRIGAQLSVLEDLALFPEPQPVENM
KLYHSWLLVGSRTEVTQVNTTNCGRLQSCSECILAQDPVCAWSFRLDECVAHAGEHRGLVQDIESADVSS
LCPKEPGERPVVFEVPVATAAHVVLPCSPSSAWASCVWHQPSGVTALTPRRDGLEVVVTPGAMGAYACEC
QEGGAAHVVAAYSLVWGSQRDAPSRAHTVGAGLAGFFLGILAASLTLILIGRRQQRRRQRELLARDKVGL
DLGAPPSGTTSYSQDPPSPSPEDERLPLALAKRGSGFGGFSPPFLLDPCPSPAHIRLTGAPLATCDETSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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