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Report for CCDS19613.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19613.1 Public Mus musculus 5 Tbx3 23 108 98 CCDS HistoryNCBI Gene:21386Re-query CCDS DB by CCDS ID:19613.1Re-query CCDS DB by GeneID:21386See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19613.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018748.8 ENSMUSP00000018748.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018748.8Link to Ensembl Protein Viewer:ENSMUSP00000018748.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000018748Re-query CCDS DB by Protein ID:ENSMUSP00000018748
Original member Current member NCBI NM_011535.3 NP_035665.2 Accepted alive Link to Nucleotide Sequence:NM_011535.3Link to Protein Sequence:NP_035665.2Re-query CCDS DB by Nucleotide ID:NM_011535Re-query CCDS DB by Protein ID:NP_035665Link to BLAST:NP_035665.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035665.2 741 P70324-1 741 100% 0 0

Chromosomal Locations for CCDS 19613.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 119672016 119672404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119674026 119674293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119675243 119675302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119675558 119675704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119677501 119677577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119678681 119678832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119680395 119681065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119682631 119683092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2226 nt):
ATGAGCCTCTCCATGAGAGATCCGGTTATCCCTGGGACAAGCATGGCCTATCATCCCTTCCTACCTCACC
GGGCGCCGGACTTCGCCATGAGCGCGGTACTGGGCCACCAGCCGCCTTTCTTCCCCGCGCTAACGCTGCC
TCCCAACGGCGCCGCGGCGCTCTCGCTCCCCGGAGCTCTGGCCAAGCCCATCATGGATCAGTTAGTGGGG
GCTGCTGAGACCGGCATCCCTTTCTCATCCCTGGGACCCCAGGCACATCTGAGGCCTCTGAAGACCATGG
AACCCGAAGAAGACGTAGAAGATGACCCTAAGGTGCACCTGGAGGCCAAGGAACTTTGGGACCAGTTTCA
CAAGCGGGGTACAGAGATGGTCATCACGAAGTCAGGAAGGCGAATGTTCCCTCCGTTTAAAGTGAGGTGC
TCTGGACTGGATAAAAAGGCCAAGTATATTTTATTGATGGACATTATAGCTGCTGACGACTGTCGATATA
AATTTCACAACTCTCGGTGGATGGTGGCCGGTAAGGCAGACCCCGAAATGCCAAAGAGAATGTATATACA
CCCGGACAGCCCCGCTACGGGGGAGCAATGGATGTCCAAAGTCGTCACTTTCCACAAACTGAAACTCACC
AACAACATATCGGATAAACACGGATTTACTTTGGCCTTCCCAAGCGATCACGCAACGTGGCAGGGGAATT
ATAGTTTTGGGACCCAGACTATACTAAACTCTATGCATAAGTACCAGCCGCGGTTCCACATCGTCAGAGC
CAACGATATCCTGAAACTGCCTTACAGTACTTTTCGAACCTACCTGTTCCCGGAAACAGAATTCATCGCC
GTTACTGCCTATCAGAATGACAAGATAACTCAGTTAAAAATAGACAACAATCCCTTTGCAAAGGGTTTTC
GAGACACTGGCAATGGCAGGAGAGAAAAAAGAAAGCAGCTCACACTGCAGTCCATGAGAGTGTTTGAGGA
GAGGCATAAGAAGGAGACTTCGGATGAGTCCTCCAGCGAGCAGGCAGCCTTCAACTGCTTTGCCCAGGCA
TCCTCTCCTGCTGTCTCCATCGTGGGGACATCCAACCTCAAAGATCTGTGTCCCAGCGAAGCCGAGAGTG
ACGCCGAGGCTGAGAGCAAGGAGGAGCACGGCCCTGAGGCCTGCGACGCGGCCAAGATTTCCACCACTAC
GGCCGAGGAGCCAGGCCGCGACAAGGGCAGCCCAGCAACCAGGGCGCAGCTGTTCCCCGCGGAGCCCAGC
CGGGCCCGCGACACCGCGCGTCTGGACAAGGCATCGCCAGACTCGCGCCATAGCCCGGCCACCATCTCGT
CCAGCACGCGAGTTCCGGGAGCTGATGAGCGCAGGAGTCCCGGGCGCGAGGGTCCAGTCGCCACCAAGGT
GGATGAGGCGCGCGCGATTCCTGCCAAGGACGCCTTCGCTCCACTGTCGGTGCAGACAGACGCCACCGCG
CACCTAGCGCAGGGGCCCCTCCCGGGCTTGGGTTTCGCCCCAGGCCTTGCGGGCCAGCAGTTCTTCAACG
GGCACCCGCTCTTCCTGCACCCGGGCCAGTTCGCCATGGGCGGCGCCTTCTCTAGCATGGCTGCAGGCAT
GGGGCCCCTGCTGGCCACAGTATCCGGAGCATCCACCGGCGTCTCAGGCCTAGAATCCACAGCCATGGCC
TCGGCTGCCGCAGCGCAGGGACTGTCTGGGGCGTCGGCTGCCACCCTGCCCTTCCACCTCCAACAACACG
TTCTGGCCTCCCAGGGCTTGGCTATGTCGCCTTTCGGGAGCCTGTTTCCTTACCCCTACACATACATGGC
TGCAGCAGCTGCAGCCTCCACCGCGGCCGCCTCCAGCTCCGTGCACCGCCACCCGTTCCTCAATTTGAAC
AGCATGCGCCCCAGGCTGCGTTACAGCCCCTATTCCATCCCCGTCCCAGTGCCGGATAGCAGCAGTTTGC
TGGCCACAGCTTTACCATCAATGGCTTCCGCCGCGGGGCCCCTAGACGGCAAAGCGGCCGCCCTGGCAGC
CAGCCCAGCCTCGGTGGCTGTGGACTCGGGGTCGGAACTGAACAGCCGCTCGTCCACGCTGTCCTCTGGC
TCAGTGTCCTTGTCACCCAAACTCTGCTCCGAGAAGGAGGCGGCTACCAGCGAACTGCAGAGTATCCAGC
GGCTGGTCAGTGGCTTGGAAGCCAAGCCAGACAGGTCTTGCAGCGGGTCCCCTTAA

Translation (741 aa):
MSLSMRDPVIPGTSMAYHPFLPHRAPDFAMSAVLGHQPPFFPALTLPPNGAAALSLPGALAKPIMDQLVG
AAETGIPFSSLGPQAHLRPLKTMEPEEDVEDDPKVHLEAKELWDQFHKRGTEMVITKSGRRMFPPFKVRC
SGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMSKVVTFHKLKLT
NNISDKHGFTLAFPSDHATWQGNYSFGTQTILNSMHKYQPRFHIVRANDILKLPYSTFRTYLFPETEFIA
VTAYQNDKITQLKIDNNPFAKGFRDTGNGRREKRKQLTLQSMRVFEERHKKETSDESSSEQAAFNCFAQA
SSPAVSIVGTSNLKDLCPSEAESDAEAESKEEHGPEACDAAKISTTTAEEPGRDKGSPATRAQLFPAEPS
RARDTARLDKASPDSRHSPATISSSTRVPGADERRSPGREGPVATKVDEARAIPAKDAFAPLSVQTDATA
HLAQGPLPGLGFAPGLAGQQFFNGHPLFLHPGQFAMGGAFSSMAAGMGPLLATVSGASTGVSGLESTAMA
SAAAAQGLSGASAATLPFHLQQHVLASQGLAMSPFGSLFPYPYTYMAAAAAASTAAASSSVHRHPFLNLN
SMRPRLRYSPYSIPVPVPDSSSLLATALPSMASAAGPLDGKAAALAASPASVAVDSGSELNSRSSTLSSG
SVSLSPKLCSEKEAATSELQSIQRLVSGLEAKPDRSCSGSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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