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Report for CCDS19614.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19614.1 Public Mus musculus 5 Tbx3 23 108 98 CCDS HistoryNCBI Gene:21386Re-query CCDS DB by CCDS ID:19614.1Re-query CCDS DB by GeneID:21386See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19614.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079719.10 ENSMUSP00000078657.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079719.10Link to Ensembl Protein Viewer:ENSMUSP00000078657.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000079719Re-query CCDS DB by Protein ID:ENSMUSP00000078657
Original member Current member EBI ENSMUST00000121021.7 ENSMUSP00000112519.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121021.7Link to Ensembl Protein Viewer:ENSMUSP00000112519.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121021Re-query CCDS DB by Protein ID:ENSMUSP00000112519
Original member Current member NCBI NM_198052.2 NP_932169.1 Accepted alive Link to Nucleotide Sequence:NM_198052.2Link to Protein Sequence:NP_932169.1Re-query CCDS DB by Nucleotide ID:NM_198052Re-query CCDS DB by Protein ID:NP_932169Link to BLAST:NP_932169.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932169.1 721 P70324-2 721 100% 0 0

Chromosomal Locations for CCDS 19614.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 119672016 119672404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119674026 119674293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119675558 119675704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119677501 119677577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119678681 119678832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119680395 119681065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119682631 119683092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2166 nt):
ATGAGCCTCTCCATGAGAGATCCGGTTATCCCTGGGACAAGCATGGCCTATCATCCCTTCCTACCTCACC
GGGCGCCGGACTTCGCCATGAGCGCGGTACTGGGCCACCAGCCGCCTTTCTTCCCCGCGCTAACGCTGCC
TCCCAACGGCGCCGCGGCGCTCTCGCTCCCCGGAGCTCTGGCCAAGCCCATCATGGATCAGTTAGTGGGG
GCTGCTGAGACCGGCATCCCTTTCTCATCCCTGGGACCCCAGGCACATCTGAGGCCTCTGAAGACCATGG
AACCCGAAGAAGACGTAGAAGATGACCCTAAGGTGCACCTGGAGGCCAAGGAACTTTGGGACCAGTTTCA
CAAGCGGGGTACAGAGATGGTCATCACGAAGTCAGGAAGGCGAATGTTCCCTCCGTTTAAAGTGAGGTGC
TCTGGACTGGATAAAAAGGCCAAGTATATTTTATTGATGGACATTATAGCTGCTGACGACTGTCGATATA
AATTTCACAACTCTCGGTGGATGGTGGCCGGTAAGGCAGACCCCGAAATGCCAAAGAGAATGTATATACA
CCCGGACAGCCCCGCTACGGGGGAGCAATGGATGTCCAAAGTCGTCACTTTCCACAAACTGAAACTCACC
AACAACATATCGGATAAACACGGATTTACTATACTAAACTCTATGCATAAGTACCAGCCGCGGTTCCACA
TCGTCAGAGCCAACGATATCCTGAAACTGCCTTACAGTACTTTTCGAACCTACCTGTTCCCGGAAACAGA
ATTCATCGCCGTTACTGCCTATCAGAATGACAAGATAACTCAGTTAAAAATAGACAACAATCCCTTTGCA
AAGGGTTTTCGAGACACTGGCAATGGCAGGAGAGAAAAAAGAAAGCAGCTCACACTGCAGTCCATGAGAG
TGTTTGAGGAGAGGCATAAGAAGGAGACTTCGGATGAGTCCTCCAGCGAGCAGGCAGCCTTCAACTGCTT
TGCCCAGGCATCCTCTCCTGCTGTCTCCATCGTGGGGACATCCAACCTCAAAGATCTGTGTCCCAGCGAA
GCCGAGAGTGACGCCGAGGCTGAGAGCAAGGAGGAGCACGGCCCTGAGGCCTGCGACGCGGCCAAGATTT
CCACCACTACGGCCGAGGAGCCAGGCCGCGACAAGGGCAGCCCAGCAACCAGGGCGCAGCTGTTCCCCGC
GGAGCCCAGCCGGGCCCGCGACACCGCGCGTCTGGACAAGGCATCGCCAGACTCGCGCCATAGCCCGGCC
ACCATCTCGTCCAGCACGCGAGTTCCGGGAGCTGATGAGCGCAGGAGTCCCGGGCGCGAGGGTCCAGTCG
CCACCAAGGTGGATGAGGCGCGCGCGATTCCTGCCAAGGACGCCTTCGCTCCACTGTCGGTGCAGACAGA
CGCCACCGCGCACCTAGCGCAGGGGCCCCTCCCGGGCTTGGGTTTCGCCCCAGGCCTTGCGGGCCAGCAG
TTCTTCAACGGGCACCCGCTCTTCCTGCACCCGGGCCAGTTCGCCATGGGCGGCGCCTTCTCTAGCATGG
CTGCAGGCATGGGGCCCCTGCTGGCCACAGTATCCGGAGCATCCACCGGCGTCTCAGGCCTAGAATCCAC
AGCCATGGCCTCGGCTGCCGCAGCGCAGGGACTGTCTGGGGCGTCGGCTGCCACCCTGCCCTTCCACCTC
CAACAACACGTTCTGGCCTCCCAGGGCTTGGCTATGTCGCCTTTCGGGAGCCTGTTTCCTTACCCCTACA
CATACATGGCTGCAGCAGCTGCAGCCTCCACCGCGGCCGCCTCCAGCTCCGTGCACCGCCACCCGTTCCT
CAATTTGAACAGCATGCGCCCCAGGCTGCGTTACAGCCCCTATTCCATCCCCGTCCCAGTGCCGGATAGC
AGCAGTTTGCTGGCCACAGCTTTACCATCAATGGCTTCCGCCGCGGGGCCCCTAGACGGCAAAGCGGCCG
CCCTGGCAGCCAGCCCAGCCTCGGTGGCTGTGGACTCGGGGTCGGAACTGAACAGCCGCTCGTCCACGCT
GTCCTCTGGCTCAGTGTCCTTGTCACCCAAACTCTGCTCCGAGAAGGAGGCGGCTACCAGCGAACTGCAG
AGTATCCAGCGGCTGGTCAGTGGCTTGGAAGCCAAGCCAGACAGGTCTTGCAGCGGGTCCCCTTAA

Translation (721 aa):
MSLSMRDPVIPGTSMAYHPFLPHRAPDFAMSAVLGHQPPFFPALTLPPNGAAALSLPGALAKPIMDQLVG
AAETGIPFSSLGPQAHLRPLKTMEPEEDVEDDPKVHLEAKELWDQFHKRGTEMVITKSGRRMFPPFKVRC
SGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMSKVVTFHKLKLT
NNISDKHGFTILNSMHKYQPRFHIVRANDILKLPYSTFRTYLFPETEFIAVTAYQNDKITQLKIDNNPFA
KGFRDTGNGRREKRKQLTLQSMRVFEERHKKETSDESSSEQAAFNCFAQASSPAVSIVGTSNLKDLCPSE
AESDAEAESKEEHGPEACDAAKISTTTAEEPGRDKGSPATRAQLFPAEPSRARDTARLDKASPDSRHSPA
TISSSTRVPGADERRSPGREGPVATKVDEARAIPAKDAFAPLSVQTDATAHLAQGPLPGLGFAPGLAGQQ
FFNGHPLFLHPGQFAMGGAFSSMAAGMGPLLATVSGASTGVSGLESTAMASAAAAQGLSGASAATLPFHL
QQHVLASQGLAMSPFGSLFPYPYTYMAAAAAASTAAASSSVHRHPFLNLNSMRPRLRYSPYSIPVPVPDS
SSLLATALPSMASAAGPLDGKAAALAASPASVAVDSGSELNSRSSTLSSGSVSLSPKLCSEKEAATSELQ
SIQRLVSGLEAKPDRSCSGSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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