NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19618.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19618.1 Public Mus musculus 5 Sdsl 23 108 98 CCDS HistoryNCBI Gene:257635Re-query CCDS DB by CCDS ID:19618.1Re-query CCDS DB by GeneID:257635See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19618.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031594.12 ENSMUSP00000031594.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031594.12Link to Ensembl Protein Viewer:ENSMUSP00000031594.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031594Re-query CCDS DB by Protein ID:ENSMUSP00000031594
Original member Current member EBI ENSMUST00000052258.13 ENSMUSP00000058198.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052258.13Link to Ensembl Protein Viewer:ENSMUSP00000058198.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000052258Re-query CCDS DB by Protein ID:ENSMUSP00000058198
Original member NCBI NM_133902.2 NP_598663.2 Updated not alive Link to Nucleotide Sequence:NM_133902.2Link to Protein Sequence:NP_598663.2Re-query CCDS DB by Nucleotide ID:NM_133902Re-query CCDS DB by Protein ID:NP_598663
Current member NCBI NM_133902.3 NP_598663.2 Accepted alive Link to Nucleotide Sequence:NM_133902.3Link to Protein Sequence:NP_598663.2Re-query CCDS DB by Nucleotide ID:NM_133902Re-query CCDS DB by Protein ID:NP_598663Link to BLAST:NP_598663.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598663.2 329 Q8R238 329 100% 0 0

Chromosomal Locations for CCDS 19618.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 120458358 120458551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120459445 120459569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120459756 120459983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120460607 120460695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120461977 120462116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120462846 120462885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120463032 120463205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGGAGGGGGCCTTGGCAGAACGCGTCGGGGCGGAGCCTTTCCACAGGGTCACGCCCCTGCTGGAGAGCT
GGGCGCTGTCTCAGGTGGCAGGCATGCCGGTCTTCCTCAAATATGAGAATGTGCAGATAGCTGGCTCCTT
TAAGATTCGGGGCATCGGACATTTCTGCCAGCAGATGGCCAAGAGGGGATGCAGACATCTGGTGTGCTCC
TCAGGGGGCAATGCGGGCATTGCGGCTGCATACTCGGCTCGTAAGCTGGGCATCCCCGTCACCATCGTGC
TCCCAGAGGGCACCTCCGTGCAGGTGGTGAGGCGGCTCGAGGGGGAAGGGGCCGAGGTCCAGCTGACTGG
GAAAGTCTGGGATGAAGCCAATGTAAAAGCACAAGAACTGGCCACAAGGGATGGCTGGGTGAACGTCTCC
CCGTTTGACCATCCCCTTATATGGGAAGGCCATGCCAGCCTAGTGCGGGAGCTGAAGGAGTCACTAGGGA
CCCCTCCAGGTGCTGTGGTGCTGGCCGTGGGGGGCGGAGGGCTCCTGGCAGGTGTGACTGCTGGCCTGCT
GGAGGTGGGCTGGCAGCATGTGCCCATCGTTGCCATGGAGACCCGCGGGGCGCACAGTTTCAATTCGGCC
TTGCAGGCAGGCAGGCCGGTCACCCTGCCAGACATCACCAGTGTAGCCAAGAGCCTCGGAGCCAAGACGG
TGGCTGCACGGACCTTGGAGTGTGCAAAGGAGTGTGAGGTCCTCTCTGAGGTGGTAGAAGACCGGGAGGC
TGTCAGCGCTGTGCAGAGGTTCCTGGACGATGAGCGCATGCTGGTGGAACCTGCCTGCGGTGCCGCCCTG
GCCGCCATCTACTCGGGCATCCTGTGGAGGCTCCAGGCTGAGGGCCGCCTGAGTTCTGCCCTAGCTTCCG
TTGTGGTCATCGTGTGCGGTGGCAACAACATTAGTAGCCAACAGCTTCAGGAGCTGAAAATCCAGCTGGG
CTGCAGCTGA

Translation (329 aa):
MEGALAERVGAEPFHRVTPLLESWALSQVAGMPVFLKYENVQIAGSFKIRGIGHFCQQMAKRGCRHLVCS
SGGNAGIAAAYSARKLGIPVTIVLPEGTSVQVVRRLEGEGAEVQLTGKVWDEANVKAQELATRDGWVNVS
PFDHPLIWEGHASLVRELKESLGTPPGAVVLAVGGGGLLAGVTAGLLEVGWQHVPIVAMETRGAHSFNSA
LQAGRPVTLPDITSVAKSLGAKTVAARTLECAKECEVLSEVVEDREAVSAVQRFLDDERMLVEPACGAAL
AAIYSGILWRLQAEGRLSSALASVVVIVCGGNNISSQQLQELKIQLGCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH