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Report for CCDS19654.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19654.2 Public Mus musculus 5 P2rx4 23 108 98 CCDS HistoryNCBI Gene:18438Re-query CCDS DB by CCDS ID:19654.2Re-query CCDS DB by GeneID:18438See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 19654.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031429.13 ENSMUSP00000031429.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031429.13Link to Ensembl Protein Viewer:ENSMUSP00000031429.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031429Re-query CCDS DB by Protein ID:ENSMUSP00000031429
Original member Current member NCBI NM_011026.3 NP_035156.2 Accepted alive Link to Nucleotide Sequence:NM_011026.3Link to Protein Sequence:NP_035156.2Re-query CCDS DB by Nucleotide ID:NM_011026Re-query CCDS DB by Protein ID:NP_035156Link to BLAST:NP_035156.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035156.2 388 Q9JJX6-1 388 98.9691% 0 4

Chromosomal Locations for CCDS 19654.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 122707654 122707787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122714399 122714546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122718313 122718384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122718501 122718573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122719130 122719226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122724594 122724674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122724990 122725131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122725230 122725366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122727198 122727291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122727399 122727464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122727745 122727840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122728287 122728313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGGCAGGCTGCTGCTCCGTGCTCCGGGCTTTCCTGTTCGAGTACGACACGCCGCGCATCGTGCTCATCC
GCAGCCGTAAAGTGGGGCTCATGAACCGCGTGGTGCAGCTGCTCATCCTGGCTTACGTCATTGGGTGGGT
GTTCGTGTGGGAAAAGGGCTACCAGGAAACGGACTCTGTGGTCAGCTCGGTGACAACCAAAGCCAAAGGT
GTGGCTGTGACCAACACTTCTCAGCTTGGATTCCGGATCTGGGACGTGGCCGACTATGTGGTCCCAGCTC
AGGAGGAAAACTCCCTCTTCATCATGACCAACATGATCGTCACCGTGAACCAGACGCAGGGTACCTGTCC
AGAGATTCCTGATAAGACCAGCATTTGCGATTCAGACGCCAACTGCACTCTCGGCTCCTCGGACACCCAC
AGCAGTGGAATTGGGACTGGAAGGTGTGTTCCATTCAACGCGTCTGTGAAGACCTGTGAGGTGGCCGCAT
GGTGCCCAGTGGAGAATGACGCTGGTGTGCCAACGCCAGCTTTTTTAAAGGCTGCAGAAAACTTCACCCT
CTTGGTAAAGAACAACATCTGGTACCCCAAGTTTAATTTCAGCAAGAGGAATATCCTCCCCAACATTACC
ACCTCCTACCTCAAGTCGTGCATTTATAATGCGCGGACGGATCCCTTCTGCCCCATATTCCGTCTTGGCC
AAATCGTGGCGGATGCGGGCCACAGCTTTCAGGAGATGGCAGTGGAGGGAGGCATCATGGGTATCCAGAT
CAAGTGGGACTGCAACCTTGACAGAGCTGCCTCCCACTGCCTGCCCAGATATTCCTTCCGGCGCCTCGAC
ACTCGGGACTTAGAACACAACGTGTCTCCTGGCTACAATTTCAGGTTTGCCAAGTACTACAGGGACCTTG
CTGGCAATGAGCAACGCACACTCACCAAGGCATATGGCATCCGCTTTGACATCATCGTGTTTGGAAAGGC
TGGCAAGTTTGACATCATCCCAACCATGATCAATGTTGGCTCTGGCTTGGCGCTCCTAGGGGTGGCGACC
GTGCTGTGTGACGTCATAGTCCTCTACTGTATGAAGAAGAGATACTACTACCGGGACAAGAAATATAAGT
ATGTGGAAGACTACGAGCAGGGTCTTTCCGGAGAGACGGACCAGTGA

Translation (388 aa):
MAGCCSVLRAFLFEYDTPRIVLIRSRKVGLMNRVVQLLILAYVIGWVFVWEKGYQETDSVVSSVTTKAKG
VAVTNTSQLGFRIWDVADYVVPAQEENSLFIMTNMIVTVNQTQGTCPEIPDKTSICDSDANCTLGSSDTH
SSGIGTGRCVPFNASVKTCEVAAWCPVENDAGVPTPAFLKAAENFTLLVKNNIWYPKFNFSKRNILPNIT
TSYLKSCIYNARTDPFCPIFRLGQIVADAGHSFQEMAVEGGIMGIQIKWDCNLDRAASHCLPRYSFRRLD
TRDLEHNVSPGYNFRFAKYYRDLAGNEQRTLTKAYGIRFDIIVFGKAGKFDIIPTMINVGSGLALLGVAT
VLCDVIVLYCMKKRYYYRDKKYKYVEDYEQGLSGETDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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