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Report for CCDS19674.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19674.1 Public Mus musculus 5 Pitpnm2 23 108 98 CCDS HistoryNCBI Gene:19679Re-query CCDS DB by CCDS ID:19674.1Re-query CCDS DB by GeneID:19679See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19674.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086123.10 ENSMUSP00000083292.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086123.10Link to Ensembl Protein Viewer:ENSMUSP00000083292.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000086123Re-query CCDS DB by Protein ID:ENSMUSP00000083292
Original member Current member EBI ENSMUST00000162812.7 ENSMUSP00000124740.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162812.7Link to Ensembl Protein Viewer:ENSMUSP00000124740.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162812Re-query CCDS DB by Protein ID:ENSMUSP00000124740
Original member NCBI NM_011256.3 NP_035386.1 Updated not alive Link to Nucleotide Sequence:NM_011256.3Link to Protein Sequence:NP_035386.1Re-query CCDS DB by Nucleotide ID:NM_011256Re-query CCDS DB by Protein ID:NP_035386
Current member NCBI NM_011256.4 NP_035386.1 Accepted alive Link to Nucleotide Sequence:NM_011256.4Link to Protein Sequence:NP_035386.1Re-query CCDS DB by Nucleotide ID:NM_011256Re-query CCDS DB by Protein ID:NP_035386Link to BLAST:NP_035386.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035386.1 1281 Q6ZPQ6-2 1281 100% 0 0

Chromosomal Locations for CCDS 19674.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 124121263 124121586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124121668 124121796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124121873 124122056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124122570 124122719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124122889 124123037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124123125 124123241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124123543 124123659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124123939 124124087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124125299 124125463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124127177 124127347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124128603 124128781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124129164 124129402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124130207 124130326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124130471 124130660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124131095 124131342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124133168 124133238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124133365 124133469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124135148 124135243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124136102 124136401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124140524 124140751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124142069 124142190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124143433 124143647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124152544 124152621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3846 nt):
ATGATCATAAAGGAATACCGGATTCCCCTGCCAATGACCGTGGATGAATACCGCATTGCCCAGCTGTACA
TGATACAGAAGAAGAGCCGGAATGAGACCCACGGGCAAGGCAGCGGGGTAGAGATCCTGGAGAACCGGCC
CTACACAGACGGCCCTGGCGGCTCCGGGCAATACACCCACAAGGTGTATCATGTGGGCATGCACATTCCT
GGCTGGTTTCGCTCCATCTTGCCCAAAGCAGCCTTGCGGGTGGTGGAGGAGTCCTGGAATGCCTACCCCT
ATACCCGAACAAGGTTCACCTGCCCCTTTGTGGAGAAGTTCTCCATTGACATTGAAACCTTTTATAAGAC
AGACACTGGGGAAAACAATAATGTGTTCAACCTGTCTCCTGTGGAAAAGAGCCAGCTGATAACAGACATC
ATCGACATCGTCAAGGATCCTGTGCCCCCCAGTGAGTATAAGACAGAAGAAGACCCCAAGCTGTTCCAGT
CAGTCAAGACTTGCCGGGGACCTCTTTCTGAAAACTGGATTCAGGAGTACAAGAAGCGGCTCCTCCCCAT
CATGTGCGCCTACAAGCTCTGCAAGGTGGAGTTCCGATACTGGGGCATGCAGTCCAAGATTGAAAGGTTC
ATCCATGACACAGGTCTGCGGCGGGTGATGGTGAGGGCCCACCGGCAGGCCTGGTGCTGGCAGGACGAGT
GGTACGGACTGACCATGGAGAAAATCCGAGAGCTGGAGAGGGAGGTGCAGCTCATGCTGTCCCGCAAAAT
GGCCCAGTTTTCGGAGGAAGGCCCCTCAGAACTAAGCAAGGACAGTGCCACCAAGGACCAGGCATCTGGA
ACAACCTCTGATCCTGGCAGCAAAAACGGGGAGCCTCTGGGGCGGGGCCTGAAGAAGCAGTGGTCCACCT
CCTCCAAGTCCTCAAGGTCCTCCAAGCGGGGAGCCAGCCCCTCCCGACATAGCATCTCAGAGTGGAGGAT
GCAGAGTATCGCCAGGGACTCCGACGAAGGCTCGGAAGAGGAGTTCTTCGATGCACATGAGAACCTGTAC
TGCACAGAGGAAAAACAAGCCAAGGACATGACCAAGTGGAACTCCAACGACCTCATGGACAAAATGGAGA
GTCCGGAGCCTGAGGAATCACAAGATGAAATCTACCAGCAGAGTGGCTCTGAGTTCAGGGTGGCCTCCAG
CGTGGAGCAGCTGAACATCATCGAGGATGAGGTGAGCCAGCCACTAGCCGCGCCACCCTCCAAGATTCAC
GTGCTGCTGCTGGTGCTGCATGGAGGCACCATCCTGGACACTGGAGCGGGGGACCCCAGCTCCAAGCAGG
GGGACACCAATACTATCACCAACGTGTTCGACACCGTCATGCGCGTGCACTACCCCAGTGCCCTAGGCCA
CCTAGCCATCCGCCTGGTGCCCTGCCCACCCATCTGTGCTGATGCCTTCGCCCTCGTCTCCAACCTCAGT
CCCTATGGCCATGATGAGGGCTGTCTGTCTAGCAGCCAGGACCACATCCCCCTAGCTGCCCTGCCCCTGC
TGGCCACTTCCTCACCCCAGTACCAGGAGGCAGTTGCTACAGTGATTCAGCGGGCCAACCTGGCCTACGG
AGACTTCATCAAGTCCCAGGAAGGTGTGACCTTCAATGGTCAGGTCTGCCTGATTGGAGACTGTGTTGGG
GGCATCCTGGCATTTGATGCCTTATGCTACAGTGGCCAGCCAGTGTCTGAGAGTCAAAGCAGTAGCCGCC
GAGGCAGTGTGGTCAGCATGCAGGACGCTGACCTGCTGTCCCCGGGCACCCTGGCGAATGCAGCACACTG
CTCCGGTGGCAGTGGCGGTGGCGGCAGCGGAGGCTCCAGCCTGGAGAGCAGTCGGCACCTGAGCCGCAGC
AACATTGACATCCCCCGAAGCAACGGCACTGAGGACTCCAGAAGGCAGCTGCCCCGCAAAAGGAGTGACT
CGTCCACCTATGAGCTGGACACCATCCAGCAGCACCAGGCCTTCCTATCCAGCCTCCACGCCAGCGTGCT
GAGGAATGAGCCCAGCTCCCGCCGCTCAAGCAGTTCCACGATGCTGGACGGTGCCGGGGCCCTGGGCAAG
TTTGACTTCGAGATTGCCGACCTCTTCCTCTTCGGGTGCCCGCTGGGGCTAGTCCTAGCCTTGAGGAAAA
CAGTCATCCCTTCCCTGGACGTTTTCCAGCTGCGTCCAGCGTGTCAGCAAGTGTACAACCTCTTCCACCC
CGCGGACCCCTCAGCCTCCCGCCTGGAGCCGCTGCTGGAGCGGCGTTTCCACAGCCTGCCGCCTTTCAGC
ATCCCTCGGTACCAGCGCTACCCGCTGGGGGACGGCTGCTCCACACTGCTGGCGGATGTGCTTCAGACCC
ACAACACAGTCTTCCAAGAGCATGCAGCCCCCTCGTCACCTGGCACAGCCCCTGCTGGCCGTGGCTTCCG
CAGAGCCAGTGAGATCAGTATCGCCAGTCAGGTGTCAGGCATGGCCGAGAGCTACACAGCGTCCAGCATC
GCCCAGATTGCTGCCAAGTGGTGGGGACAGAAGCGGATTGACTATGCCCTGTATTGCCCGGACGCCCTCA
CGGCCTTCCCCACGGTGGCCTTGCCCCACCTCTTCCACGCCAGCTACTGGGAGTCAACCGACGTGGTCTC
CTTTCTGCTGAGACAGGTCATGCGGCACGACAGCTCGAGCATCCTAGAGCTGGACGGCAAGGAGGTGTCC
GTGTTCACGCCTTCACAGCCCAGGGAAAGGTGGCAGCGCAAGAGGACCCACGTGAAGCTGCGGAACGTGG
CAGCCAACCACCGGATCAATGACGCAGTTGCCAATGAGGATGGCCCGCAGGTTGTGACGGGCCGGTTCAT
GTATGGGCCCTTAGACATGGTCACCCTGACTGGGGAAAAGGTGGATGTGCACATCATGACGCAACCACCT
TCAGGTGAGTGGCTGCACCTAGACACTCTAGTGACCAACAGCAGTGGGCGCGTCTCCTACACCATTCCAG
AAACACACCGCCTGGGGGTGGGCGTCTACCCCATCAAGATGGTGGTCAGGGGAGACCACACATTCGCCGA
CAGCTACATCACTGTGCTCCCCAGGGGCACAGAGTTTGTGGTCTTCAGTATAGACGGCTCCTTTGCCGCC
AGTGTGTCCATCATGGGCAGCGACCCCAAGGTGCGCGCCGGGGCTGTGGACGTGGTGCGACACTGGCAGG
ACCTGGGCTACCTCATCATCTATGTGACCGGCCGGCCCGACATGCAAAAGCAGCGGGTGGTGGCATGGCT
GGCTCAGCACAATTTCCCTCATGGTGTGGTGTCCTTCTGTGATGGCCTGGTGCACGACCCACTGCGCCAC
AAGGCTAACTTTCTGAAGCTGCTCATCTCTGAGCTTCACCTGCGCGCACATGCGGCCTACGGCTCCACGA
AGGATGTCGCAGTCTATAACTCCATCAGCCTCTCTCCCATGCACATCTACATTGTGGGCCGCCCCACCAA
GAAGCTGCAGCAGCAGTGCCAGTTCATCACGGACGGCTATGCGGCCCACCTGGCCCAGCTCAAGTACAAT
CACCGGGCTCGCCCAGCCCGGAACACGGCCACGCGCATGGCTTTGCGCAAGGGCAGCTTCGGCCTACCTG
GCCAGAGTGACTTCCTTCGCTCTCGGAATCACCTGCTCCGCACCATCTCGGCCCAGCCCAGTGGGCCCAG
CCATCGGCACGATCGGACACAGACCCAGATGGACAGCGAGCAGCGGGGCCAGCGCAGCATGAGCGTGGCA
GCCAGCTGCTGGGGCCGAGCCATGGCAGGCCGGCTTGAACCAGGGGCAGCCACGGGACCCAAGTAG

Translation (1281 aa):
MIIKEYRIPLPMTVDEYRIAQLYMIQKKSRNETHGQGSGVEILENRPYTDGPGGSGQYTHKVYHVGMHIP
GWFRSILPKAALRVVEESWNAYPYTRTRFTCPFVEKFSIDIETFYKTDTGENNNVFNLSPVEKSQLITDI
IDIVKDPVPPSEYKTEEDPKLFQSVKTCRGPLSENWIQEYKKRLLPIMCAYKLCKVEFRYWGMQSKIERF
IHDTGLRRVMVRAHRQAWCWQDEWYGLTMEKIRELEREVQLMLSRKMAQFSEEGPSELSKDSATKDQASG
TTSDPGSKNGEPLGRGLKKQWSTSSKSSRSSKRGASPSRHSISEWRMQSIARDSDEGSEEEFFDAHENLY
CTEEKQAKDMTKWNSNDLMDKMESPEPEESQDEIYQQSGSEFRVASSVEQLNIIEDEVSQPLAAPPSKIH
VLLLVLHGGTILDTGAGDPSSKQGDTNTITNVFDTVMRVHYPSALGHLAIRLVPCPPICADAFALVSNLS
PYGHDEGCLSSSQDHIPLAALPLLATSSPQYQEAVATVIQRANLAYGDFIKSQEGVTFNGQVCLIGDCVG
GILAFDALCYSGQPVSESQSSSRRGSVVSMQDADLLSPGTLANAAHCSGGSGGGGSGGSSLESSRHLSRS
NIDIPRSNGTEDSRRQLPRKRSDSSTYELDTIQQHQAFLSSLHASVLRNEPSSRRSSSSTMLDGAGALGK
FDFEIADLFLFGCPLGLVLALRKTVIPSLDVFQLRPACQQVYNLFHPADPSASRLEPLLERRFHSLPPFS
IPRYQRYPLGDGCSTLLADVLQTHNTVFQEHAAPSSPGTAPAGRGFRRASEISIASQVSGMAESYTASSI
AQIAAKWWGQKRIDYALYCPDALTAFPTVALPHLFHASYWESTDVVSFLLRQVMRHDSSSILELDGKEVS
VFTPSQPRERWQRKRTHVKLRNVAANHRINDAVANEDGPQVVTGRFMYGPLDMVTLTGEKVDVHIMTQPP
SGEWLHLDTLVTNSSGRVSYTIPETHRLGVGVYPIKMVVRGDHTFADSYITVLPRGTEFVVFSIDGSFAA
SVSIMGSDPKVRAGAVDVVRHWQDLGYLIIYVTGRPDMQKQRVVAWLAQHNFPHGVVSFCDGLVHDPLRH
KANFLKLLISELHLRAHAAYGSTKDVAVYNSISLSPMHIYIVGRPTKKLQQQCQFITDGYAAHLAQLKYN
HRARPARNTATRMALRKGSFGLPGQSDFLRSRNHLLRTISAQPSGPSHRHDRTQTQMDSEQRGQRSMSVA
ASCWGRAMAGRLEPGAATGPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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