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Report for CCDS20338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20338.1 Public Mus musculus 6 Mgll 23 108 98 CCDS HistoryNCBI Gene:23945Re-query CCDS DB by CCDS ID:20338.1Re-query CCDS DB by GeneID:23945See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20338.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089449.4 ENSMUSP00000086872.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089449.4Link to Ensembl Protein Viewer:ENSMUSP00000086872.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000089449Re-query CCDS DB by Protein ID:ENSMUSP00000086872
Original member Current member EBI ENSMUST00000113585.8 ENSMUSP00000109215.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113585.8Link to Ensembl Protein Viewer:ENSMUSP00000109215.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113585Re-query CCDS DB by Protein ID:ENSMUSP00000109215
Original member NCBI NM_011844.4 NP_035974.1 Updated not alive Link to Nucleotide Sequence:NM_011844.4Link to Protein Sequence:NP_035974.1Re-query CCDS DB by Nucleotide ID:NM_011844Re-query CCDS DB by Protein ID:NP_035974
Current member NCBI NM_011844.5 NP_035974.1 Accepted alive Link to Nucleotide Sequence:NM_011844.5Link to Protein Sequence:NP_035974.1Re-query CCDS DB by Nucleotide ID:NM_011844Re-query CCDS DB by Protein ID:NP_035974Link to BLAST:NP_035974.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035974.1 303 O35678-1 303 100% 0 0

Chromosomal Locations for CCDS 20338.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 88725721 88725845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88764596 88764702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88808011 88808147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88809336 88809446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88818574 88818663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88823191 88823406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88825651 88825776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGCCTGAGGCAAGTTCACCCAGGCGAACTCCACAGAATGTTCCCTACCAGGACCTGCCTCACCTGGTCA
AT
GCAGACGGACAGTACCTCTTTTGTAGATACTGGAAGCCCAGTGGCACACCCAAGGCCCTCATCTTTGT
G
TCCCATGGAGCTGGGGAACACTGTGGCCGTTATGATGAGCTGGCTCATATGTTGAAGGGGCTGGACATG
CTG
GTATTTGCCCATGACCATGTTGGCCATGGGCAGAGTGAGGGAGAGAGGATGGTGGTGTCGGACTTCC
AA
GTTTTTGTCAGAGATGTGCTGCAACACGTGGACACCATCCAGAAGGACTACCCCGACGTCCCCATCTT
C
CTCCTGGGCCACTCCATGGGCGGTGCCATCTCCATCCTAGTGGCTGCAGAGAGGCCAACCTACTTTTCT
GGC
ATGGTCCTGATTTCACCTCTGGTCCTTGCCAATCCGGAATCTGCATCGACTTTGAAGGTCCTTGCTG
CC
AAACTGCTCAATTTTGTCCTGCCAAATATGACCTTGGGGCGCATTGACTCCAGCGTGCTGTCTCGGAA
C
AAGTCGGAGGTTGACCTGTACAACTCTGACCCACTCGTCTGCCGAGCAGGGCTGAAGGTGTGCTTTGGC
ATA
CAGCTGCTGAATGCCGTCGCAAGAGTGGAGCGAGCAATGCCCAGGCTGACACTGCCATTCCTGCTGC
TG
CAGGGTTCTGCTGACCGGCTTTGCGACAGCAAAGGTGCCTACCTGCTCATGGAATCATCCCGGAGTCA
G
GACAAAACACTCAAGATGTATGAAGGTGCCTATCACGTCCTCCACAGGGAGCTTCCGGAAGTGACCAAC
TCC
GTCCTCCATGAAGTAAACTCGTGGGTGTCTCACAGGATAGCAGCAGCAGGAGCTGGGTGTCCACCCT
GA


Translation (303 aa):
MPEASSPRRTPQNVPYQDLPHLVNADGQYLFCRYWKPSGTPKALIFVSHGAGEHCGRYDELAHMLKGLDM
L
VFAHDH
VGHGQSEGERMVVSDFQVFVRDVLQHVDTIQKDYPDVPIFLLGHSMGGAISILVAAERPTYFS
G
MVLISPLVLANPESASTLK
VLAAKLLNFVLPNMTLGRIDSSVLSRNKSEVDLYNSDPLVCRAGLKVCFG
I
QLLNAVARVERAMPRLTLPFLLLQGSADRLCDSKGAYLLMESSRSQDKTLK
MYEGAYHVLHRELPEVTN
S
VLHEVNSWVSHRIAAAGAGCPP




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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