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Report for CCDS20424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20424.1 Public Mus musculus 6 Prrt3 23 108 98 CCDS HistoryNCBI Gene:210673Re-query CCDS DB by CCDS ID:20424.1Re-query CCDS DB by GeneID:210673See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20424.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101059.3 ENSMUSP00000098620.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101059.3Link to Ensembl Protein Viewer:ENSMUSP00000098620.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000101059Re-query CCDS DB by Protein ID:ENSMUSP00000098620
Original member Current member NCBI NM_172487.4 NP_766075.2 Accepted alive Link to Nucleotide Sequence:NM_172487.4Link to Protein Sequence:NP_766075.2Re-query CCDS DB by Nucleotide ID:NM_172487Re-query CCDS DB by Protein ID:NP_766075Link to BLAST:NP_766075.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766075.2 971 Q6PE13 971 100% 0 0

Chromosomal Locations for CCDS 20424.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113494291 113496065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113496932 113497084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113497272 113498259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2916 nt):
ATGGCCCCCAGCCCACAGGCCTGCACATCTCCTCTTCTGCTGTTGCTGCTGCCATGCCTGGGGGCTGGCC
CT
GCCTTGGGCAGAGGCCTTCCCAGGCCCCTGGAGAACTCAGAACCTCACATGATCCCATCAGAGTCACA
G
ACCTTTGACCTCTTCTGGGAGAAGCTGAGAAATGAGAGTTCCTGGCACAGCGGTGACCCTCAGGCCCGT
GCT
GAGGGGCCCAAGAAGCCCGCAGACCCTTACCTAGGACCAGCCCTGCATGGGCCCAAGGCAGCCCCTG
GG
GTCCAAGGTGAAAGACTACTAAGAGCTGATGACCTCCAGCTGGCCCGAGCATTCACCTCCCAAGGCTG
G
ACAGGACCTCCTGACTCACAGGAGCTTCTGGAGCCTGAGGCACCAGAACCCCACCCTGTGCGAGCACCT
CGT
CTCACTCTTGTCACTACAACTCCCAGCTCCCTACTCTCGGCAGCCATACTTTCCACTGCCTCCCAGA
AG
CCTGGAGGCACAGCAGGGCAGCAGCCAGCTAGGAACGAGGAGCTAATAATGGTCAAAGCCGAGACCCA
C
ATCACACAGGCTTCCCCCTGGGACTTCCAGGGCTCTTCCCACACTCCGGTACCCGAGACAGATGCTGTG
AGG
ACGCTGGTGTTGGGGAAGCAGGGGGGACATGAACAGGGCTTCCAGGAGGCTGTCCAGGGTCCCCTAC
TC
ACCCAGCAGGATCCAGTAGTCCCTGGGGTCGGCTCAACACCCCCAGTTAAAGTGGAATCCACCCCAGA
G
CCTGGAGCCCAGCTCGACCTGGCATTGGTCAGAAGCCTTCCTCTTCCTGAGGGGCTGCCAGCTGAACCC
CCC
AAAACTGGAGCTGGGGATACCTGGGAAGTCAGCTCTCTGGGACCCCAACCAGAACAGACCGATCTCC
TT
GGAGGACAAGATTCCCCAGCACCCCAGCCTATACCACCTTCAGCCTCAGACACTTCTGATGGGCACCT
A
AGACCAGTATCCTCGCTGAATGGAGCCGACCCCATCTCCCCACAACGTGTGAGAGGAGCGATGGAGGCC
CCA
GGAACCCCCAAGTCCTTCATCCCTGACCTTCCAAATTCTGCTCAAGCTGCAAATGGAACAGAGAGCC
CT
GTGAGGGCCCTGCAGCCAGATGAAGCCGAGGATTGGCCGGGTCGCCCACAAAGCCACCCTCCAGCACC
C
CCTGTCCAGGCCCCCTCGACATCTCGGCGTGGTCTCGTTAGAGTCACCACACAGAGAGCTCTGGGCCAG
CCA
CTCCCTCCGGAGCCCTCAGCCAGCTCCATAGTCCCCATCCCAGCTTCTAGCCCCCCAGCCAATGCCA
CC
GCACCTCCCCTGCGTTGGGGACCCCTTCGGCGGGTGCTGAGTTTCTCCTGGGAGCTTCATGTGTATGG
G
GTGGGGGTGCTTTTCCTGCTTCCAGCATTATTGGCATTGGTCACAGTGGCAGCCGCCCTAGCGGGACCC
CGA
TTAGCACTAGTGGCTGCCGCGCTGGTATTGGTGGCTTCAGGGCTGCGATCTGCCTACATGCTCACGG
AT
CCTTATGGCTCTCAGGCGCGACTGGGAGTACGTGCAGGTCTGGTGCTATACAACTTGCCCTTCCCCTT
G
CTACTCACTGCACTGGCAGCACTCACCCTGCTGGGCTTGGGTGCTGGTCTGCCACAGCCTCTGCAGAAG
CCG
CTGCTGCTGGGAATTGTGGCACCGGTGCATGGCACATGTTTGCTGGCTACAGACCTGTTCTCCACCA
GC
CCTGTGCTCAACCTTCTAACACAAGGCTTATCTTGCGCCTGGGGCGCCTCAGTGGCTCTGGGCACACT
C
TGCCTGTGCCGTCGACGCCTGCTGGAAGGCCCTCGGGGCTGGGATGCCAGTCCAGGGCCCCGGCTGTTG
GCT
GTGGCGGGCTCACTGGGGCTGTTGGCCAGTGGTCTGCAGTTGGCGGCCTCTCTCTGGCTGTACCCAG
GG
CCTGGCCGGGAGGGTCGCTTCTCCTGGGCTTGGTGGGGCGTGCACTTCTGGCTGCGCCTGCTGGAATT
G
ACCTGGGCACTGGCCCTGGCGCTAGCTGCCCTGGCTGCCACTCGTCCCAGGCCGCCCACGGAGCACGCT
TGC
TGGGCTAAGCTGCTGCGTCTGGCGTGCCCCGCGCCTACAGGGAAGAGCGAAGTTCCCGAGAGACCCA
AT
AACTGCTATGCGGGGCCCAGTGGCCTGGGCACAGGCGGCCTGGACATCAGCAAAAGTCTCATCCGCAA
C
GCTGCTGGGGAAGCTGGGCTTCCTGTCACTCCTGGTTCTGGACCCTGGGGTTCGGCTGCATCGCTGGGT
CGC
GGTCGTCCAGGTGGCCAGAGGATGTCCCGGGGCAGTGTGGGGCCCGCACCGTCGCTGAGCGAGCTGG
AT
CTGCGGCCACCGTCACCTATCAATTTGAGCCGCAGCATCGACGCCGCGCTCTTCCGGGAGCACTTGGT
T
CGAGAGAGTGTGTTCCAACGCTGTGGTCTCCGTGGCTTGGCCTCCTCGCCGACAGGGGGCGCCCTGCGG
CCT
CGCCGCGGCAGCCAGCCCGATGCCGAGCTCGACGGCGCGGGCACATCATTGCTCCGAGGCCGCTGCC
GC
TCGCTCACCGAGGTGTGCTTGCGCACGTCGCTCCCGCAGCACGTGATGGAGCCGCCCGTCGGCGCGGC
G
GCCGCGGGGACTTCGGGCAGCTCCCTGGACAGTTTCTCCAAGGGCTCGCTGAAGATCAGCTGGAACCCG
TGG
CGTCACGGGCTGTCATCCGTGGACAGCCTGCCCCTAGATGAACTGCCCAGCACCGTGCAGCTGCTGC
CA
CCACCTACCCCAGTCCCTGCTCCTGCCCGGGCGGGGGAGCCTCAGGGCGAGGGCCAGTCGCGTTGCAA
G
TCCAGCGAGTCTCACAGCGCCTCTAGTGACACTATAGAGCTCTAA


Translation (971 aa):
MAPSPQACTSPLLLLLLPCLGAGPALGRGLPRPLENSEPHMIPSESQTFDLFWEKLRNESSWHSGDPQAR
A
EGPKKPADPYLGPALHGPKAAPGVQGERLLRADDLQLARAFTSQGWTGPPDSQELLEPEAPEPHPVRAP
R
LTLVTTTPSSLLSAAILSTASQKPGGTAGQQPARNEELIMVKAETHITQASPWDFQGSSHTPVPETDAV
R
TLVLGKQGGHEQGFQEAVQGPLLTQQDPVVPGVGSTPPVKVESTPEPGAQLDLALVRSLPLPEGLPAEP
P
KTGAGDTWEVSSLGPQPEQTDLLGGQDSPAPQPIPPSASDTSDGHLRP
VSSLNGADPISPQRVRGAMEA
P
GTPKSFIPDLPNSAQAANGTESPVRALQP
DEAEDWPGRPQSHPPAPPVQAPSTSRRGLVRVTTQRALGQ
P
LPPEPSASSIVPIPASSPPANATAPPLRWGPLRRVLSFSWELHVYGVGVLFLLPALLALVTVAAALAGP
R
LALVAAALVLVASGLRSAYMLTDPYGSQARLGVRAGLVLYNLPFPLLLTALAALTLLGLGAGLPQPLQK
P
LLLGIVAPVHGTCLLATDLFSTSPVLNLLTQGLSCAWGASVALGTLCLCRRRLLEGPRGWDASPGPRLL
A
VAGSLGLLASGLQLAASLWLYPGPGREGRFSWAWWGVHFWLRLLELTWALALALAALAATRPRPPTEHA
C
WAKLLRLACPAPTGKSEVPERPNNCYAGPSGLGTGGLDISKSLIRNAAGEAGLPVTPGSGPWGSAASLG
R
GRPGGQRMSRGSVGPAPSLSELDLRPPSPINLSRSIDAALFREHLVRESVFQRCGLRGLASSPTGGALR
P
RRGSQPDAELDGAGTSLLRGRCRSLTEVCLRTSLPQHVMEPPVGAAAAGTSGSSLDSFSKGSLKISWNP
W
RHGLSSVDSLPLDELPSTVQLLPPPTPVPAPARAGEPQGEGQSRCKSSESHSASSDTIEL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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