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Report for CCDS2047.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2047.1 Public Homo sapiens 2 CHST10 24 110 108 CCDS HistoryNCBI Gene:9486Re-query CCDS DB by CCDS ID:2047.1Re-query CCDS DB by GeneID:9486See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2047.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264249.8 ENSP00000264249.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264249.8Link to Ensembl Protein Viewer:ENSP00000264249.3Re-query CCDS DB by Nucleotide ID:ENST00000264249Re-query CCDS DB by Protein ID:ENSP00000264249
Original member Current member EBI ENST00000409701.5 ENSP00000387309.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409701.5Link to Ensembl Protein Viewer:ENSP00000387309.1Re-query CCDS DB by Nucleotide ID:ENST00000409701Re-query CCDS DB by Protein ID:ENSP00000387309
Original member Current member NCBI NM_004854.5 NP_004845.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004854.5Link to Protein Sequence:NP_004845.1Re-query CCDS DB by Nucleotide ID:NM_004854Re-query CCDS DB by Protein ID:NP_004845Link to BLAST:NP_004845.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004845.1 356 O43529 356 100% 0 0

Chromosomal Locations for CCDS 2047.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 100393245 100393782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 100395509 100395614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 100397908 100398142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 100402564 100402655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 100406576 100406675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGCACCACCAGTGGCTTCTGCTGGCCGCATGCTTTTGGGTGATTTTCATGTTCATGGTGGCTAGCAAGT
TCATCACGTTGACCTTTAAAGACCCAGATGTGTACAGTGCCAAACAGGAGTTTCTGTTCCTGACAACCAT
GCCGGAAGTGAGGAAGTTGCCAGAAGAGAAGCACATTCCTGAGGAACTGAAGCCAACTGGGAAGGAGCTT
CCAGACAGCCAGCTCGTTCAGCCCCTGGTCTACATGGAGCGCCTGGAACTCATCAGAAACGTCTGCAGGG
ATGATGCCCTGAAGAATCTCTCGCACACTCCTGTCTCCAAGTTTGTCCTGGACCGAATATTTGTCTGTGA
CAAGCACAAGATTCTTTTCTGCCAGACTCCCAAAGTGGGCAACACCCAGTGGAAGAAAGTGCTGATTGTT
CTAAATGGAGCATTTTCTTCCATTGAGGAGATCCCCGAAAACGTGGTGCACGACCACGAGAAGAACGGCC
TTCCTCGGCTCTCTTCCTTCAGTGATGCAGAAATTCAGAAGCGATTGAAAACATACTTCAAGTTTTTTAT
TGTAAGAGATCCCTTCGAAAGACTTATTTCTGCATTTAAGGATAAATTTGTTCACAATCCCCGGTTTGAG
CCTTGGTACAGGCATGAGATTGCTCCTGGCATCATCAGAAAATACAGGAGGAACCGGACAGAGACCCGGG
GGATCCAGTTTGAAGATTTCGTGCGCTACCTCGGCGATCCGAACCACAGATGGCTAGACCTTCAGTTTGG
GGACCACATCATTCACTGGGTGACGTATGTAGAGCTCTGTGCTCCCTGTGAGATAATGTACAGTGTGATT
GGACACCACGAGACCCTGGAGGACGATGCCCCATACATCTTAAAAGAGGCTGGCATTGACCACCTGGTGT
CATACCCGACTATCCCTCCGGGCATTACCGTGTATAACAGAACCAAGGTGGAGCACTATTTCCTGGGCAT
CAGCAAACGAGACATCCGACGCCTGTATGCCCGTTTCGAAGGGGACTTTAAGCTCTTTGGGTACCAGAAA
CCAGACTTTTTGCTAAACTAA

Translation (356 aa):
MHHQWLLLAACFWVIFMFMVASKFITLTFKDPDVYSAKQEFLFLTTMPEVRKLPEEKHIPEELKPTGKEL
PDSQLVQPLVYMERLELIRNVCRDDALKNLSHTPVSKFVLDRIFVCDKHKILFCQTPKVGNTQWKKVLIV
LNGAFSSIEEIPENVVHDHEKNGLPRLSSFSDAEIQKRLKTYFKFFIVRDPFERLISAFKDKFVHNPRFE
PWYRHEIAPGIIRKYRRNRTETRGIQFEDFVRYLGDPNHRWLDLQFGDHIIHWVTYVELCAPCEIMYSVI
GHHETLEDDAPYILKEAGIDHLVSYPTIPPGITVYNRTKVEHYFLGISKRDIRRLYARFEGDFKLFGYQK
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 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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