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Report for CCDS20560.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20560.1 Public Mus musculus 6 D6Wsu163e 23 108 98 CCDS HistoryNCBI Gene:28040Re-query CCDS DB by CCDS ID:20560.1Re-query CCDS DB by GeneID:28040See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20560.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032497.6 ENSMUSP00000032497.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032497.6Link to Ensembl Protein Viewer:ENSMUSP00000032497.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000032497Re-query CCDS DB by Protein ID:ENSMUSP00000032497
Original member NCBI NM_138594.3 NP_613060.1 Updated not alive Link to Nucleotide Sequence:NM_138594.3Link to Protein Sequence:NP_613060.1Re-query CCDS DB by Nucleotide ID:NM_138594Re-query CCDS DB by Protein ID:NP_613060
Current member NCBI NM_138594.4 NP_613060.1 Accepted alive Link to Nucleotide Sequence:NM_138594.4Link to Protein Sequence:NP_613060.1Re-query CCDS DB by Nucleotide ID:NM_138594Re-query CCDS DB by Protein ID:NP_613060Link to BLAST:NP_613060.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_613060.1 552 Q91YN0 552 100% 0 0

Chromosomal Locations for CCDS 20560.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 126942329 126942506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126944792 126944937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126946477 126946658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126950058 126950157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126950275 126950396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126954735 126954841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126955135 126955332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126955849 126955977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126961966 126962040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126966880 126967082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126973556 126973613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126974487 126974554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126975111 126975203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGAAGAAAAACCGAGAAAGGTTCTGCAACAAGGAAAGGGAATTTGTGTACAAGTTCCAGGTAGGACGTG
AGCGCTTAGAGCTGAGAGTGCCCCTCAGGTTTCCTGTGGAGGAGAATGCCAGTCATCTGCATGGACGTCT
GATGCTGCTGCACAGCTTGCCTTGCTTCATAGAGAGTGACTTAAAAGATGCTCTGAGCCGGTTTATAGAA
GAAGAATCCCTCAGAGACCATGACAGCGATGCAGAAGCATGCTTGGAGGCCGTTAAATCCGGTGAAGTAG
ATCTGCACCAGCTGGCAAGTGCGTGGGCCAAAGCTTACGCTGAGACCACCTTAGAGCATGCGAGACCTGA
GGAGCCTGACTGGGACGAAGACTTTGCAGATGTGTACCATGACCTAATCCACTCCCCGGCCTCTGAAACT
CTCTTAAATCTGGAACACAACTACTTCGTTAGCATCTCAGAGCTGATTGGTGAAAGAGACGTGGAGCTGA
AAAAGTTACGAGAGAGACAAGGTATTGAAATGGAAAAGGTGATGCAGGAGCTGGGGAAATCGCTCACAGA
TCAAGATGTGAATTCACTGGCTGCCCAGCACTTTGAATCCCAGCAAGACTTAGAGAATAAATGGTCAAAT
GAACTGAAACAGTCTACAGCTATCCAGAAGCAAGAATATCAGGAATGGGTGATAAAGCTTCATCAGGACC
TAAAAAACCCCAACAACAGCTCCCTCAGTGAAGAGATTAAAGTGCAGCCGAGTCAGTTCAGAGAGTCTGC
GGACGCTGCTGGGAGGATCTACGAGGAACAGAGGAAGCTGGAGGAGAGCTTCACCATTCACCTGGGAGCC
CAGTTGAAGACCATGCACAACCTGCGGCTGCTGAGGGCAGACATGCTGGACTTCTGTAAGCATAAGAGAA
CTCACGGGAGCGGCGTGAAGCTCCACCGTCTGCAGACAGCACTGTCCCTCTACTCCACGTCTCTCTGTGG
CCTGGTTTTGCTAGTAGATAATCGAATTAATTCATATAGCGGCATCAAAAGAGATTTTGCCACAGTTTGC
CAAGAATGTACGGACTTCCACTTCCCACGGATTGAGGAACAACTGGAAGTTGTCCAGCAGGTGGCGCTGT
ACGCGAGAACCCAACGCAAGAGCAAGTGCAAAGAGGCCCGCGATTCTGGAAACCAAAATGGAGGAAGTGA
TGATAAGTCTAAGAATGCTGAGAGAAACTATTTAAATATTTTACCTGGAGAATTTTACATTACACGTCAT
TCTAATCTCTCGGAAATCCATGTTGCTTTCCACCTCTGTGTGGATGATAACGTGAAGTCGGGAAATATCA
CTGCTCGGGATCCCGCTATTATGGGACTCCGAAACATTCTCAAAGTCTGCTGTACCCATGATATCACAAC
GATAAGCATCCCTCTCTTGCTGGTGCATGATATGTCAGAGGAAATGACTATACCTTGGTGTTTAAGGAGA
GCAGAACTGGTATTTAAGTGTGTCAAAGGTTTCATGATGGAGATGGCTTCATGGGACGGAGGAATTTCTC
GGACAGTGCAATTTCTGGTACCACAGAGCATTTCTGAAGAAATGTTTTATCAGCTGAGCAACATGCTTCC
CCAGATCTTCCGGGTCTCCTCAACACTCACGCTGACATCCAAGCACTAA

Translation (552 aa):
MKKNRERFCNKEREFVYKFQVGRERLELRVPLRFPVEENASHLHGRLMLLHSLPCFIESDLKDALSRFIE
EESLRDHDSDAEACLEAVKSGEVDLHQLASAWAKAYAETTLEHARPEEPDWDEDFADVYHDLIHSPASET
LLNLEHNYFVSISELIGERDVELKKLRERQGIEMEKVMQELGKSLTDQDVNSLAAQHFESQQDLENKWSN
ELKQSTAIQKQEYQEWVIKLHQDLKNPNNSSLSEEIKVQPSQFRESADAAGRIYEEQRKLEESFTIHLGA
QLKTMHNLRLLRADMLDFCKHKRTHGSGVKLHRLQTALSLYSTSLCGLVLLVDNRINSYSGIKRDFATVC
QECTDFHFPRIEEQLEVVQQVALYARTQRKSKCKEARDSGNQNGGSDDKSKNAERNYLNILPGEFYITRH
SNLSEIHVAFHLCVDDNVKSGNITARDPAIMGLRNILKVCCTHDITTISIPLLLVHDMSEEMTIPWCLRR
AELVFKCVKGFMMEMASWDGGISRTVQFLVPQSISEEMFYQLSNMLPQIFRVSSTLTLTSKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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