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Report for CCDS20847.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20847.1 Public Mus musculus 7 Bbc3 23 108 98 CCDS HistoryNCBI Gene:170770Re-query CCDS DB by CCDS ID:20847.1Re-query CCDS DB by GeneID:170770See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20847.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002152.12 ENSMUSP00000002152.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002152.12Link to Ensembl Protein Viewer:ENSMUSP00000002152.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000002152Re-query CCDS DB by Protein ID:ENSMUSP00000002152
Original member NCBI NM_133234.2 NP_573497.1 Updated not alive Link to Nucleotide Sequence:NM_133234.2Link to Protein Sequence:NP_573497.1Re-query CCDS DB by Nucleotide ID:NM_133234Re-query CCDS DB by Protein ID:NP_573497
Current member NCBI NM_133234.3 NP_573497.1 Accepted alive Link to Nucleotide Sequence:NM_133234.3Link to Protein Sequence:NP_573497.1Re-query CCDS DB by Nucleotide ID:NM_133234Re-query CCDS DB by Protein ID:NP_573497Link to BLAST:NP_573497.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573497.1 193 Q99ML1 193 100% 0 0

Chromosomal Locations for CCDS 20847.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16312141 16312414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16313627 16313817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16317118 16317234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGGCCCGCGCACGCCAGGAGGGCAGCTCTCCGGAGCCCGTAGAGGGTCTAGCCCGCGACAGTCCGCGCC
CCTTCCCGCTCGGCCGCCTGATGCCCTCCGCTGTATCCTGCAGCCTTTGCGAGCCCGGCCTGCCCGCCGC
CCCTGCTGCCCCTGCCTTGCTGCCGGCCGCCTACCTCTGCGCCCCCACCGCTCCACCTGCCGTCACCGCC
GCCCTGGGGGGCCCCCGCTGGCCTGGGGGTCACCGCAGCCGGCCCAGAGGCCCGCGCCCGGACGGTCCTC
AGCCCTCCCTGTCACCAGCCCAGCAGCACTTAGAGTCGCCCGTGCCCAGCGCCCCGGAGGCCCTGGCAGG
AGGCCCCACCCAAGCTGCCCCGGGAGTGCGTGTGGAGGAGGAGGAGTGGGCCCGGGAGATCGGGGCCCAG
CTGCGGCGGATGGCGGACGACCTCAACGCGCAGTACGAGCGGCGGAGACAAGAAGAGCAGCATCGACACC
GACCCTCACCCTGGAGGGTCATGTACAATCTCTTCATGGGACTCCTCCCCTTACCCAGGGATCCTGGAGC
CCCAGAAATGGAGCCCAACTAG

Translation (193 aa):
MARARQEGSSPEPVEGLARDSPRPFPLGRLMPSAVSCSLCEPGLPAAPAAPALLPAAYLCAPTAPPAVTA
ALGGPRWPGGHRSRPRGPRPDGPQPSLSPAQQHLESPVPSAPEALAGGPTQAAPGVRVEEEEWAREIGAQ
LRRMADDLNAQYERRRQEEQHRHRPSPWRVMYNLFMGLLPLPRDPGAPEMEPN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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