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Report for CCDS20881.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20881.1 Public Mus musculus 7 Pglyrp1 23 108 98 CCDS HistoryNCBI Gene:21946Re-query CCDS DB by CCDS ID:20881.1Re-query CCDS DB by GeneID:21946See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20881.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032573.7 ENSMUSP00000032573.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032573.7Link to Ensembl Protein Viewer:ENSMUSP00000032573.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032573Re-query CCDS DB by Protein ID:ENSMUSP00000032573
Original member Current member NCBI NM_009402.2 NP_033428.1 Accepted alive Link to Nucleotide Sequence:NM_009402.2Link to Protein Sequence:NP_033428.1Re-query CCDS DB by Nucleotide ID:NM_009402Re-query CCDS DB by Protein ID:NP_033428Link to BLAST:NP_033428.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033428.1 182 O88593 182 100% 0 0

Chromosomal Locations for CCDS 20881.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 18884726 18884973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18889278 18889399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18890164 18890342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGTTGTTTGCCTGTGCTCTCCTTGCCCTCCTGGGTCTGGCAACCTCCTGCAGTTTCATCGTGCCCCGCA
GTGAGTGGAGGGCCCTGCCATCCGAGTGCTCTAGCCGCCTGGGGCACCCAGTTCGCTACGTGGTGATCTC
ACACACAGCCGGCAGCTTCTGCAACAGCCCGGACTCCTGTGAACAGCAGGCCCGCAATGTGCAGCATTAC
CACAAGAATGAGCTGGGCTGGTGCGATGTAGCCTACAACTTCCTTATTGGAGAGGACGGTCATGTCTATG
AAGGCCGAGGCTGGAACATCAAGGGTGACCACACAGGGCCCATCTGGAATCCCATGTCTATTGGCATCAC
CTTCATGGGGAACTTCATGGACCGGGTACCCGCAAAGCGGGCCCTCCGTGCTGCCCTAAATCTTCTGGAA
TGTGGGGTGTCTCGGGGCTTCCTGAGATCCAACTATGAAGTCAAAGGACACCGGGATGTGCAAAGCACTC
TCTCTCCAGGTGACCAACTCTATCAGGTCATCCAAAGCTGGGAACACTACCGAGAGTGA

Translation (182 aa):
MLFACALLALLGLATSCSFIVPRSEWRALPSECSSRLGHPVRYVVISHTAGSFCNSPDSCEQQARNVQHY
HKNELGWCDVAYNFLIGEDGHVYEGRGWNIKGDHTGPIWNPMSIGITFMGNFMDRVPAKRALRAALNLLE
CGVSRGFLRSNYEVKGHRDVQSTLSPGDQLYQVIQSWEHYRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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