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Report for CCDS21209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21209.1 Public Mus musculus 7 Spib 23 108 98 CCDS HistoryNCBI Gene:272382Re-query CCDS DB by CCDS ID:21209.1Re-query CCDS DB by GeneID:272382See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21209.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035323.5 ENSMUSP00000035539.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035323.5Link to Ensembl Protein Viewer:ENSMUSP00000035539.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000035323Re-query CCDS DB by Protein ID:ENSMUSP00000035539
Original member Current member NCBI NM_019866.1 NP_063919.1 Accepted alive Link to Nucleotide Sequence:NM_019866.1Link to Protein Sequence:NP_063919.1Re-query CCDS DB by Nucleotide ID:NM_019866Re-query CCDS DB by Protein ID:NP_063919Link to BLAST:NP_063919.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_063919.1 267 O35906-1 267 100% 0 0

Chromosomal Locations for CCDS 21209.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44527959 44528257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44528837 44528987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44529379 44529608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44529857 44529929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44531223 44531250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44532031 44532053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGCTTGCTCTGGAGGCTGCACAGCTGGATGGCCCACACTTAAGCTGTTTGTACCCAGAAGGAGTCTTCT
ACGACCTGGACAGCTGCAAGCCCTTCAGTTACCCAGATTCAGATGGGGGCCTTGACTCTACATGGGGCTG
GACAGAGGCCCCGCCTGCTCCTGCCATCGCTCCCTATGAAGCCTTCGATCCTGCTACTGCTGCCTTTAGC
CACTCCCAAACTGTTCAGCTCTGTTATAGCCATGGTCCTAACCCCTCCACCTATAGCCCCATGGGGACCC
TCGACCCAGCCCCCAGCTTGGAGGCCCCAGGGCCTGGCCTCCAGGTGTACCCCCCAGAGGACTTCACCAG
CCAGACCCTGGGCTCCTTGGCTTATGCTCCGTACCCCAGCCCTGTGCTATCAGAGGAAGAAGACATTATG
CTGGACAGCCCCGCCCTGGAGGTCTCGGACAGTGAGTCAGACGAGGCCCTCTTGGCTGGCTCCGAGGGGA
GGGGATCTGAGGCAGGTGCACGCAAGAAGCTGCGCCTGTACCAGTTCTTGCTGGGGTTGCTCCTACGCGG
GGACATGCGCGAGTGCGTGTGGTGGGTGGAGCCAGGTGCCGGCGTCTTCCAGTTCTCCTCCAAGCACAAG
GAGTTGTTGGCTCGCCGCTGGGGCCAGCAGAAGGGCAACCGCAAGCGCATGACGTATCAGAAGCTGGCCC
GAGCGCTGCGCAACTATGCCAAGACAGGCGAAATCCGCAAGGTCAAACGCAAACTCACCTACCAGTTTGA
CAGCGCGCTGCTGCCAGCCTCCCGGCATGTCTGA

Translation (267 aa):
MLALEAAQLDGPHLSCLYPEGVFYDLDSCKPFSYPDSDGGLDSTWGWTEAPPAPAIAPYEAFDPATAAFS
HSQTVQLCYSHGPNPSTYSPMGTLDPAPSLEAPGPGLQVYPPEDFTSQTLGSLAYAPYPSPVLSEEEDIM
LDSPALEVSDSESDEALLAGSEGRGSEAGARKKLRLYQFLLGLLLRGDMRECVWWVEPGAGVFQFSSKHK
ELLARRWGQQKGNRKRMTYQKLARALRNYAKTGEIRKVKRKLTYQFDSALLPASRHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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