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Report for CCDS21419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21419.1 Public Mus musculus 7 Zfand6 23 108 98 CCDS HistoryNCBI Gene:65098Re-query CCDS DB by CCDS ID:21419.1Re-query CCDS DB by GeneID:65098See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21419.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069537.2 ENSMUSP00000069228.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069537.2Link to Ensembl Protein Viewer:ENSMUSP00000069228.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000069537Re-query CCDS DB by Protein ID:ENSMUSP00000069228
Original member Current member EBI ENSMUST00000178385.8 ENSMUSP00000135968.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178385.8Link to Ensembl Protein Viewer:ENSMUSP00000135968.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178385Re-query CCDS DB by Protein ID:ENSMUSP00000135968
Original member Current member EBI ENSMUST00000209117.1 ENSMUSP00000146518.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209117.1Link to Ensembl Protein Viewer:ENSMUSP00000146518.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209117Re-query CCDS DB by Protein ID:ENSMUSP00000146518
Original member Current member NCBI NM_001360577.1 NP_001347506.1 Accepted alive Link to Nucleotide Sequence:NM_001360577.1Link to Protein Sequence:NP_001347506.1Re-query CCDS DB by Nucleotide ID:NM_001360577Re-query CCDS DB by Protein ID:NP_001347506Link to BLAST:NP_001347506.1
Original member Current member NCBI NM_001360578.1 NP_001347507.1 Accepted alive Link to Nucleotide Sequence:NM_001360578.1Link to Protein Sequence:NP_001347507.1Re-query CCDS DB by Nucleotide ID:NM_001360578Re-query CCDS DB by Protein ID:NP_001347507Link to BLAST:NP_001347507.1
Original member Current member NCBI NM_001360579.1 NP_001347508.1 Accepted alive Link to Nucleotide Sequence:NM_001360579.1Link to Protein Sequence:NP_001347508.1Re-query CCDS DB by Nucleotide ID:NM_001360579Re-query CCDS DB by Protein ID:NP_001347508Link to BLAST:NP_001347508.1
Original member Current member NCBI NM_001360580.1 NP_001347509.1 Accepted alive Link to Nucleotide Sequence:NM_001360580.1Link to Protein Sequence:NP_001347509.1Re-query CCDS DB by Nucleotide ID:NM_001360580Re-query CCDS DB by Protein ID:NP_001347509Link to BLAST:NP_001347509.1
Original member Current member NCBI NM_001360581.1 NP_001347510.1 Accepted alive Link to Nucleotide Sequence:NM_001360581.1Link to Protein Sequence:NP_001347510.1Re-query CCDS DB by Nucleotide ID:NM_001360581Re-query CCDS DB by Protein ID:NP_001347510Link to BLAST:NP_001347510.1
Original member Current member NCBI NM_022985.7 NP_075361.2 Accepted alive Link to Nucleotide Sequence:NM_022985.7Link to Protein Sequence:NP_075361.2Re-query CCDS DB by Nucleotide ID:NM_022985Re-query CCDS DB by Protein ID:NP_075361Link to BLAST:NP_075361.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347506.1 223 Q9DCH6 223 100% 0 0
NP_001347507.1 223 Q9DCH6 223 100% 0 0
NP_001347508.1 223 Q9DCH6 223 100% 0 0
NP_001347509.1 223 Q9DCH6 223 100% 0 0
NP_001347510.1 223 Q9DCH6 223 100% 0 0
NP_075361.2 223 Q9DCH6 223 100% 0 0

Chromosomal Locations for CCDS 21419.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 84615820 84615968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 84617850 84617963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 84620868 84620912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 84632656 84632756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 84633885 84633993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 84634239 84634392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGGCTCAAGAAACTAATCACAGCCAAGCACCTATGCTTTGCTCCACTGGCTGCGGATTTTATGGAAACC
CTCGTACAAATGGCATGTGTTCAGTATGCTATAAAGAACATCTTCAAAGACAGAACAGTAGCAATGGTAG
AATAAGCCCACCTGCAGCTTCTGTCAGCAGTCTGTCTGAATCCTTACCAGTACAGTGCGCAGATGGCAGT
GTCCCAGACGCTCAGTCAGCGCTAGATTCTACGTCTTCATCTATGCAGCCAGGCCCTGTGTCAAATCAGT
CACTTTTATCAGAATCTGTAGCACCTTCCCAAGTGGACAGTACATCTGTGGACAAAGCAGTATCTGAGAC
AGAAGACCTGCAAGGACCCAGAGCAGAGGGCCTTGTTCCTCTTGAATGTGATCCTCCATCTTCAGTATCA
GATACGACACAGCAGCCATCTGAAGAGCAAAGCAAGTCTCTTGAAAAACCAAAACAAAAAAAGAATCGCT
GTTTCATGTGCAGGAAGAAAGTGGGACTTACTGGGTTTGAATGCCGGTGTGGAAATGTTTACTGTGGTGT
GCACCGTTACTCAGATGTTCACAATTGCTCTTACAATTACAAAGCTGATGCTGCTGAGAAAATCAGAAAA
GAAAATCCAGTAGTTGTTGGTGAAAAGATCCAGAAGATTTGA

Translation (223 aa):
MAQETNHSQAPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAASVSSLSESLPVQCADGS
VPDAQSALDSTSSSMQPGPVSNQSLLSESVAPSQVDSTSVDKAVSETEDLQGPRAEGLVPLECDPPSSVS
DTTQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRK
ENPVVVGEKIQKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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