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Report for CCDS21480.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21480.1 Public Mus musculus 7 Serpinh1 23 108 98 CCDS HistoryNCBI Gene:12406Re-query CCDS DB by CCDS ID:21480.1Re-query CCDS DB by GeneID:12406See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21480.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094154.5 ENSMUSP00000091706.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094154.5Link to Ensembl Protein Viewer:ENSMUSP00000091706.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094154Re-query CCDS DB by Protein ID:ENSMUSP00000091706
Original member Current member EBI ENSMUST00000169437.8 ENSMUSP00000126390.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169437.8Link to Ensembl Protein Viewer:ENSMUSP00000126390.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169437Re-query CCDS DB by Protein ID:ENSMUSP00000126390
Original member Current member EBI ENSMUST00000208119.1 ENSMUSP00000146969.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208119.1Link to Ensembl Protein Viewer:ENSMUSP00000146969.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208119Re-query CCDS DB by Protein ID:ENSMUSP00000146969
Original member Current member EBI ENSMUST00000207849.1 ENSMUSP00000147064.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207849.1Link to Ensembl Protein Viewer:ENSMUSP00000147064.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207849Re-query CCDS DB by Protein ID:ENSMUSP00000147064
Original member NCBI NM_001111043.1 NP_001104513.1 Updated not alive Link to Nucleotide Sequence:NM_001111043.1Link to Protein Sequence:NP_001104513.1Re-query CCDS DB by Nucleotide ID:NM_001111043Re-query CCDS DB by Protein ID:NP_001104513
Current member NCBI NM_001111043.2 NP_001104513.1 Accepted alive Link to Nucleotide Sequence:NM_001111043.2Link to Protein Sequence:NP_001104513.1Re-query CCDS DB by Nucleotide ID:NM_001111043Re-query CCDS DB by Protein ID:NP_001104513Link to BLAST:NP_001104513.1
Original member NCBI NM_001111044.1 NP_001104514.1 Updated not alive Link to Nucleotide Sequence:NM_001111044.1Link to Protein Sequence:NP_001104514.1Re-query CCDS DB by Nucleotide ID:NM_001111044Re-query CCDS DB by Protein ID:NP_001104514
Current member NCBI NM_001111044.2 NP_001104514.1 Accepted alive Link to Nucleotide Sequence:NM_001111044.2Link to Protein Sequence:NP_001104514.1Re-query CCDS DB by Nucleotide ID:NM_001111044Re-query CCDS DB by Protein ID:NP_001104514Link to BLAST:NP_001104514.1
Original member NCBI NM_001285776.1 NP_001272705.1 Updated not alive Link to Nucleotide Sequence:NM_001285776.1Link to Protein Sequence:NP_001272705.1Re-query CCDS DB by Nucleotide ID:NM_001285776Re-query CCDS DB by Protein ID:NP_001272705
Current member NCBI NM_001285776.2 NP_001272705.1 Accepted alive Link to Nucleotide Sequence:NM_001285776.2Link to Protein Sequence:NP_001272705.1Re-query CCDS DB by Nucleotide ID:NM_001285776Re-query CCDS DB by Protein ID:NP_001272705Link to BLAST:NP_001272705.1
Original member NCBI NM_009825.2 NP_033955.2 Updated not alive Link to Nucleotide Sequence:NM_009825.2Link to Protein Sequence:NP_033955.2Re-query CCDS DB by Nucleotide ID:NM_009825Re-query CCDS DB by Protein ID:NP_033955
Current member NCBI NM_009825.3 NP_033955.2 Accepted alive Link to Nucleotide Sequence:NM_009825.3Link to Protein Sequence:NP_033955.2Re-query CCDS DB by Nucleotide ID:NM_009825Re-query CCDS DB by Protein ID:NP_033955Link to BLAST:NP_033955.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104513.1 417 P19324 417 100% 0 0
NP_001104514.1 417 P19324 417 100% 0 0
NP_001272705.1 417 P19324 417 100% 0 0
NP_033955.2 417 P19324 417 100% 0 0

Chromosomal Locations for CCDS 21480.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 99346120 99346422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99346925 99347157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99347266 99347364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99348803 99349421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGCGCTCTCTCCTTCTGGGCACCTTATGCCTCTTGGCCGTGGCCCTGGCAGCCGAGGTGAAGAAACCCC
TAGAGGCGGCAGCCCCTGGTACTGCGGAGAAGCTAAGTTCCAAGGCGACCACACTGGCAGAGCGCAGCAC
AGGCCTGGCCTTCAGCCTATATCAGGCGATGGCCAAAGACCAGGCGGTGGAGAACATCCTCCTGTCACCC
TTGGTGGTGGCCTCATCCCTGGGTCTTGTGTCACTGGGTGGTAAAGCCACCACAGCGTCGCAGGCGAAGG
CAGTGCTGAGCGCTGAGAAGCTGCGCGATGAGGAGGTGCACACGGGGCTGGGTGAGCTGCTCCGCTCCCT
CAGCAACTCCACTGCGCGCAACGTGACCTGGAAACTGGGCAGCCGCCTGTACGGGCCCAGCTCCGTGAGC
TTCGCCGATGACTTCGTGCGCAGCAGCAAGCAACACTACAACTGCGAACACTCCAAGATCAACTTCCGAG
ACAAGCGCAGCGCCCTGCAGTCCATCAACGAGTGGGCCTCGCAGACCACGGACGGCAAGCTGCCTGAGGT
CACCAAGGATGTGGAGCGCACGGATGGGGCACTGCTTGTGAACGCCATGTTCTTTAAGCCACACTGGGAT
GAGAAGTTTCACCACAAGATGGTGGACAACCGTGGCTTCATGGTGACCCGCTCCTATACTGTGGGTGTTA
CGATGATGCACCGGACAGGCCTGTACAACTACTATGACGACGAGAAGGAGAAGCTGCAGATGGTGGAGAT
GCCCCTGGCTCACAAGCTCTCCAGCCTCATCATCCTCATGCCCCACCACGTGGAGCCGCTCGAGCGCTTG
GAGAAGCTGCTGACCAAGGAGCAGCTGAAGGCCTGGATGGGAAAGATGCAGAAGAAGGCTGTCGCCATCT
CCCTGCCCAAGGGCGTGGTGGAGGTGACCCATGACCTGCAGAAACATCTGGCAGGACTGGGCCTGACCGA
GGCCATCGACAAGAACAAGGCAGACCTATCGCGCATGTCTGGCAAGAAGGACCTGTACCTAGCCAGTGTG
TTCCATGCCACTGCCTTCGAGTGGGACACCGAGGGCAACCCCTTTGACCAAGACATCTACGGGCGCGAGG
AGCTGCGCAGCCCCAAGCTGTTCTATGCCGACCACCCCTTCATCTTCCTGGTGCGAGATAATCAGAGCGG
CTCCTTGCTCTTCATTGGCCGCCTGGTCCGGCCCAAGGGAGACAAGATGCGAGATGAGTTGTAG

Translation (417 aa):
MRSLLLGTLCLLAVALAAEVKKPLEAAAPGTAEKLSSKATTLAERSTGLAFSLYQAMAKDQAVENILLSP
LVVASSLGLVSLGGKATTASQAKAVLSAEKLRDEEVHTGLGELLRSLSNSTARNVTWKLGSRLYGPSSVS
FADDFVRSSKQHYNCEHSKINFRDKRSALQSINEWASQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWD
EKFHHKMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQMVEMPLAHKLSSLIILMPHHVEPLERL
EKLLTKEQLKAWMGKMQKKAVAISLPKGVVEVTHDLQKHLAGLGLTEAIDKNKADLSRMSGKKDLYLASV
FHATAFEWDTEGNPFDQDIYGREELRSPKLFYADHPFIFLVRDNQSGSLLFIGRLVRPKGDKMRDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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