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Report for CCDS21804.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21804.1 Public Mus musculus 7 Scnn1b 23 108 98 CCDS HistoryNCBI Gene:20277Re-query CCDS DB by CCDS ID:21804.1Re-query CCDS DB by GeneID:20277See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21804.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033161.6 ENSMUSP00000033161.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033161.6Link to Ensembl Protein Viewer:ENSMUSP00000033161.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000033161Re-query CCDS DB by Protein ID:ENSMUSP00000033161
Original member Current member NCBI NM_001272023.1 NP_001258952.1 Accepted alive Link to Nucleotide Sequence:NM_001272023.1Link to Protein Sequence:NP_001258952.1Re-query CCDS DB by Nucleotide ID:NM_001272023Re-query CCDS DB by Protein ID:NP_001258952Link to BLAST:NP_001258952.1
Original member Current member NCBI NM_011325.2 NP_035455.1 Accepted alive Link to Nucleotide Sequence:NM_011325.2Link to Protein Sequence:NP_035455.1Re-query CCDS DB by Nucleotide ID:NM_011325Re-query CCDS DB by Protein ID:NP_035455Link to BLAST:NP_035455.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258952.1 638 Q9WU38 638 100% 0 0
NP_035455.1 638 Q9WU38 638 100% 0 0

Chromosomal Locations for CCDS 21804.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 121899239 121899549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121902275 121902542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121902700 121902890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121910400 121910503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121911966 121912129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121912405 121912512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121914212 121914329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121915271 121915346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121915726 121915783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121916526 121916587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121917500 121917575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121917679 121918059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1917 nt):
ATGCCAGTGAAGAAGTACCTCCTGAAGTGCCTGCACCGGCTGCAGAAGGGCCCAGGCTACACCTACAAGG
AGCTGCTAGTGTGGTACTGCAATAACACCAACACCCACGGCCCCAAACGCATCATCTGTGAGGGGCCCAA
GAAGAAGGCCATGTGGTTCCTGCTTACGCTGCTCTTCGCCTGCCTGGTGTGCTGGCAGTGGGGAGTCTTC
ATCCAGACCTACCTGAGCTGGGAGGTCAGCGTCTCGCTCTCCATGGGCTTCAAGACGATGAACTTCCCGG
CGGTCACCGTCTGCAATTCCAGCCCCTTCCAGTACTCCAAGGTCAAGCACTTGCTCAAGGACTTGGATGA
GCTAATGGAGGCAGTCCTGGAAAAGATTCTGGCTCCAGAGGCCAGCCACAGCAACACCACCAGGACCCTG
AACTTTACCATCTGGAACCACACACCCCTGGTCCTTATTGATGAGCGGAACCCTGACCACCCGGTGGTTC
TCAATTTGTTTGGGGACAGCCACAACAGCAGCAACCCGGCTCCAGGAAGCACCTGCAATGCCCAGGGATG
CAAAGTGGCCATGAGGCTGTGCAGTGCCAATGGAACTGTGTGTACCTTGCGGAACTTCACCAGTGCCACC
CAGGCCGTAACTGAGTGGTACATCCTGCAGGCCACCAACATCTTCTCACAAGTGCTTCCTCAGGACCTGG
TGGGGATGGGCTATGCCCCTGATCGCATAATCCTAGCTTGCCTGTTTGGAACAGAGCCCTGCAGTCATCG
GAACTTCACGCCTATCTTCTACCCTGATTATGGCAACTGCTACATCTTCAACTGGGGCATGACAGAGGAG
ACACTTCCTTCTGCCAACCCTGGGACTGAATTTGGTCTCAAGTTGATCCTGGACATCGGTCAGGAGGACT
ATGTCCCCTTCCTTGCGTCCACAGCAGGGGCTAGGCTGATGCTTCATGAGCAGAGGACGTACCCCTTCAT
TAGAGAGGAGGGCATCTATGCCATGGCAGGAACTGAGACGTCTATTGGGGTGCTGGTGGACAAGCTGCAA
CGCAAGGGGGAGCCCTACAGTCCCTGCACCATGAACGGCTCCGATGTTGCCATAAAGAACCTCTACAGTG
TCTACAACACCACCTATTCCATCCAGGCCTGTCTTCATTCCTGTTTCCAAGACCACATGATCCGTAACTG
CAGTTGTGGCCACTACTTATACCCACTGCCTGAAGGAGAGAAATACTGCAACAACAGGGACTTCCCAGAC
TGGGCCTATTGCTATCTAAACCTGCAGATGAGTGTGACCCAGAGAGAGACCTGCCTCAGCATGTGCAAGG
AGTCCTGCAATGACACCCAGTATAAGATGACCATCTCCATGGCTGACTGGCCATCTGAGGCCTCTGAGGA
TTGGATCTTACATGTCCTGTCTCAGGAGCGGGACCAGAGCTCGAATATCACCCTGAGCAGGAAGGGTATT
GTCAAGCTCAATATCTACTTCCAAGAGTTCAACTACCGTACCATTGAGGAATCTCCAGCCAACAATATTG
TGTGGCTGCTCTCTAACCTGGGGGGCCAGTTTGGCTTCTGGATGGGGGGCTCGGTGCTGTGCCTCATTGA
GTTTGGGGAGATCATTATCGACTTCATTTGGATCACCATCATCAAGCTGGTGGCCTCCTGCAAAGGCCTG
CGCAGGAGGCGGCCACAGGCACCCTACACTGGCCCACCGCCCACTGTGGCTGAGCTGGTAGAGGCCCACA
CCAACTTTGGCTTCCAGCCTGACACAACCAGCTGCAGGCCCCACGGCGAGGTCTACCCTGACCAACAGAC
TCTGCCCATCCCGGGGACTCCACCCCCCAACTATGACTCCCTGAGGCTGCAGCCGCTGGACACCATGGAG
TCGGACAGTGAGGTGGAGGCCATCTAG

Translation (638 aa):
MPVKKYLLKCLHRLQKGPGYTYKELLVWYCNNTNTHGPKRIICEGPKKKAMWFLLTLLFACLVCWQWGVF
IQTYLSWEVSVSLSMGFKTMNFPAVTVCNSSPFQYSKVKHLLKDLDELMEAVLEKILAPEASHSNTTRTL
NFTIWNHTPLVLIDERNPDHPVVLNLFGDSHNSSNPAPGSTCNAQGCKVAMRLCSANGTVCTLRNFTSAT
QAVTEWYILQATNIFSQVLPQDLVGMGYAPDRIILACLFGTEPCSHRNFTPIFYPDYGNCYIFNWGMTEE
TLPSANPGTEFGLKLILDIGQEDYVPFLASTAGARLMLHEQRTYPFIREEGIYAMAGTETSIGVLVDKLQ
RKGEPYSPCTMNGSDVAIKNLYSVYNTTYSIQACLHSCFQDHMIRNCSCGHYLYPLPEGEKYCNNRDFPD
WAYCYLNLQMSVTQRETCLSMCKESCNDTQYKMTISMADWPSEASEDWILHVLSQERDQSSNITLSRKGI
VKLNIYFQEFNYRTIEESPANNIVWLLSNLGGQFGFWMGGSVLCLIEFGEIIIDFIWITIIKLVASCKGL
RRRRPQAPYTGPPPTVAELVEAHTNFGFQPDTTSCRPHGEVYPDQQTLPIPGTPPPNYDSLRLQPLDTME
SDSEVEAI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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