NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21845.1 Public Mus musculus 7 Aldoa 23 108 98 CCDS HistoryNCBI Gene:11674Re-query CCDS DB by CCDS ID:21845.1Re-query CCDS DB by GeneID:11674See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21845.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032934.11 ENSMUSP00000032934.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032934.11Link to Ensembl Protein Viewer:ENSMUSP00000032934.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000032934Re-query CCDS DB by Protein ID:ENSMUSP00000032934
Original member Current member EBI ENSMUST00000106348.7 ENSMUSP00000101955.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106348.7Link to Ensembl Protein Viewer:ENSMUSP00000101955.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106348Re-query CCDS DB by Protein ID:ENSMUSP00000101955
Original member NCBI NM_001177308.1 NP_001170779.1 Updated not alive Link to Nucleotide Sequence:NM_001177308.1Link to Protein Sequence:NP_001170779.1Re-query CCDS DB by Nucleotide ID:NM_001177308Re-query CCDS DB by Protein ID:NP_001170779
Current member NCBI NM_001177308.2 NP_001170779.1 Accepted alive Link to Nucleotide Sequence:NM_001177308.2Link to Protein Sequence:NP_001170779.1Re-query CCDS DB by Nucleotide ID:NM_001177308Re-query CCDS DB by Protein ID:NP_001170779Link to BLAST:NP_001170779.1
Original member NCBI NM_007438.4 NP_031464.1 Updated not alive Link to Nucleotide Sequence:NM_007438.4Link to Protein Sequence:NP_031464.1Re-query CCDS DB by Nucleotide ID:NM_007438Re-query CCDS DB by Protein ID:NP_031464
Current member NCBI NM_007438.5 NP_031464.1 Accepted alive Link to Nucleotide Sequence:NM_007438.5Link to Protein Sequence:NP_031464.1Re-query CCDS DB by Nucleotide ID:NM_007438Re-query CCDS DB by Protein ID:NP_031464Link to BLAST:NP_031464.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001170779.1 364 P05064 364 100% 0 0
NP_031464.1 364 P05064 364 100% 0 0

Chromosomal Locations for CCDS 21845.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126795419 126795514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126795613 126795812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126795950 126796124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126796217 126796300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126796595 126796755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126796854 126796908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126797337 126797548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126797644 126797755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGCCCCACCCATACCCAGCACTGACCCCGGAGCAGAAGAAGGAGCTGTCTGACATCGCTCACCGCATTG
TGGCTCCGGGCAAGGGCATCCTGGCTGCAGATGAGTCCACCGGAAGCATTGCCAAGCGCCTGCAGTCCAT
TGGCACCGAGAACACCGAGGAGAACAGGCGCTTCTACCGCCAGCTGCTGCTGACTGCAGACGACCGTGTG
AATCCCTGCATTGGGGGGGTGATCCTCTTCCACGAGACACTGTACCAGAAGGCAGATGATGGACGTCCCT
TCCCCCAAGTTATCAAGTCCAAGGGTGGTGTTGTGGGCATTAAGGTAGATAAGGGTGTGGTGCCCCTGGC
AGGAACCAATGGCGAGACAACTACCCAGGGGCTGGATGGGCTGTCTGAACGCTGTGCCCAGTATAAGAAG
GATGGAGCCGACTTTGCCAAGTGGCGCTGTGTGCTAAAGATTGGGGAACATACTCCCTCGGCCCTGGCCA
TCATGGAAAATGCCAATGTTCTGGCCCGTTATGCCAGCATCTGCCAGCAGAATGGCATTGTACCCATTGT
GGAGCCTGAAATTCTCCCTGATGGGGACCATGACTTGAAGCGCTGCCAGTATGTTACTGAGAAGGTCCTG
GCGGCTGTCTACAAGGCTCTGAGCGACCACCATGTCTATCTGGAAGGCACATTGCTGAAGCCCAACATGG
TCACCCCTGGCCATGCTTGCACCCAGAAATTTTCCAATGAGGAGATTGCCATGGCAACGGTCACAGCACT
TCGTCGCACAGTGCCCCCTGCTGTCACTGGGGTCACTTTCCTGTCTGGAGGGCAGAGTGAGGAAGAGGCA
TCCATCAACCTCAATGCTATCAACAAGTGCCCCCTGCTGAAGCCATGGGCCTTGACTTTCTCCTATGGTC
GAGCCCTGCAGGCCTCTGCTCTAAAGGCCTGGGGTGGGAAGAAGGAGAACCTGAAGGCAGCCCAGGAGGA
GTACATCAAGCGCGCCCTGGCCAACAGCCTCGCTTGTCAAGGAAAGTATACCCCAAGTGGCCAGTCTGGA
GCCGCAGCCAGTGAATCTCTCTTCATCTCTAACCATGCCTACTAA

Translation (364 aa):
MPHPYPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRV
NPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKK
DGADFAKWRCVLKIGEHTPSALAIMENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVL
AAVYKALSDHHVYLEGTLLKPNMVTPGHACTQKFSNEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEA
SINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYIKRALANSLACQGKYTPSGQSG
AAASESLFISNHAY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH