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Report for CCDS22031.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22031.1 Public Mus musculus 7 Tnnt3 23 108 98 CCDS HistoryNCBI Gene:21957Re-query CCDS DB by CCDS ID:22031.1Re-query CCDS DB by GeneID:21957See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22031.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074187.12 ENSMUSP00000073815.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074187.12Link to Ensembl Protein Viewer:ENSMUSP00000073815.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000074187Re-query CCDS DB by Protein ID:ENSMUSP00000073815
Original member Current member EBI ENSMUST00000105945.7 ENSMUSP00000101565.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105945.7Link to Ensembl Protein Viewer:ENSMUSP00000101565.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105945Re-query CCDS DB by Protein ID:ENSMUSP00000101565
Original member Current member NCBI NM_011620.3 NP_035750.2 Accepted alive Link to Nucleotide Sequence:NM_011620.3Link to Protein Sequence:NP_035750.2Re-query CCDS DB by Nucleotide ID:NM_011620Re-query CCDS DB by Protein ID:NP_035750Link to BLAST:NP_035750.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035750.2 248 Q9QZ47-10 248 99.5968% 0 1

Chromosomal Locations for CCDS 22031.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 142501638 142501654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142501829 142501842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142504048 142504065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142504250 142504264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142505288 142505299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142508335 142508353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142510664 142510709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142511257 142511373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142511465 142511542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142512036 142512149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142512256 142512365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142512532 142512622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142514326 142514366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142515776 142515830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGTCTGACGAGGAAACTGAACAAGTTGAGGAGGAGGCCCAAGAGGAAGAAGTCCAGGAGGAAGCCCCCG
AACCAGAGGAGAAACCAAGACCCAAACTTACTGCTCCTAAGATCCCGGAAGGGGAGAAAGTAGACTTTGA
TGACATCCAGAAGAAGCGTCAAAACAAGGACCTCATGGAGCTCCAAGCCCTCATTGACAGCCACTTTGAA
GCTAGAAAGAAAGAAGAAGAGGAGCTAATCGCACTTAAAGAAAGAATTGAGAAGCGCCGTGCAGAGAGGG
CTGAGCAGCAAAGAATTCGCGCTGAGAAGGAGCGGGAACGCCAGAACAGATTGGCGGAGGAGAAGGCCAG
AAGAGAGGAGGAGGATGCCAAGAGGAGAGCTGAAGATGACATGAAGAAGAAAAAGGCTCTGTCCTCCATG
GGTGCCAACTACAGCAGCTACCTGGCCAAGGCTGACCAGAAGAGAGGCAAGAAACAGACAGCCCGGGAAA
TGAAAAAGAAGATTCTTGCCGAAAGGCGCAAGCCTCTGAACATTGACCATCTTAGCGATGACAAGCTGAG
GGACAAGGCCAAGGAACTCTGGGATACCTTGTACCAACTGGAGACTGACAAATTCGAGTTTGGGGAGAAG
CTGAAACGTCAGAAATATGATATCACCACCCTCAGGAGCCGCATTGACCAAGCCCAGAAGCACAGCAAGA
AGGCCGGTGCCACAGCCAAGGGCAAAGTCGGTGGGCGCTGGAAGTAA

Translation (248 aa):
MSDEETEQVEEEAQEEEVQEEAPEPEEKPRPKLTAPKIPEGEKVDFDDIQKKRQNKDLMELQALIDSHFE
ARKKEEEELIALKERIEKRRAERAEQQRIRAEKERERQNRLAEEKARREEEDAKRRAEDDMKKKKALSSM
GANYSSYLAKADQKRGKKQTAREMKKKILAERRKPLNIDHLSDDKLRDKAKELWDTLYQLETDKFEFGEK
LKRQKYDITTLRSRIDQAQKHSKKAGATAKGKVGGRWK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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