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Report for CCDS22033.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22033.2 Public Mus musculus 7 Igf2 23 108 98 CCDS HistoryNCBI Gene:16002Re-query CCDS DB by CCDS ID:22033.2Re-query CCDS DB by GeneID:16002See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 22033.2
The coding region has been updated to extend the N-terminus. The use of an alternative upstream start codon would result in a protein that is 11 aa longer. This upstream AUG has a stronger Kozak signal than the downstream site and and appears to be rodent-specific, but according to the software program SignalP3.0, the 11 additional amino acids are not predicted to disrupt cleavage of the signal peptide.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22033.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121128.7 ENSMUSP00000114076.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121128.7Link to Ensembl Protein Viewer:ENSMUSP00000114076.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121128Re-query CCDS DB by Protein ID:ENSMUSP00000114076
Original member Current member NCBI NM_010514.3 NP_034644.2 Accepted alive Link to Nucleotide Sequence:NM_010514.3Link to Protein Sequence:NP_034644.2Re-query CCDS DB by Nucleotide ID:NM_010514Re-query CCDS DB by Protein ID:NP_034644Link to BLAST:NP_034644.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034644.2 191 P09535-2 191 100% 0 0

Chromosomal Locations for CCDS 22033.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 142653816 142654052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142654300 142654448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142655654 142655816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142658364 142658390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGGGCGGCAGCGTCGCCGGCTTCCAGGTACCAATGGGGATCCCAGTGGGGAAGTCGATGTTGGTGCTTC
TCATCTCTTTGGCCTTCGCCTTGTGCTGCATCGCTGCTTACGGCCCCGGAGAGACTCTGTGCGGAGGGGA
GCTTGTTGACACGCTTCAGTTTGTCTGTTCGGACCGCGGCTTCTACTTCAGCAGGCCTTCAAGCCGTGCC
AACCGTCGCAGCCGTGGCATCGTGGAAGAGTGCTGCTTCCGCAGCTGCGACCTGGCCCTCCTGGAGACAT
ACTGTGCCACCCCCGCCAAGTCCGAGAGGGACGTGTCTACCTCTCAGGCCGTACTTCCGGACGACTTCCC
CAGATACCCCGTGGGCAAGTTCTTCCAATATGACACCTGGAGACAGTCCGCGGGACGCCTGCGCAGAGGC
CTGCCTGCCCTCCTGCGTGCCCGCCGGGGTCGCATGCTTGCCAAAGAGCTCAAAGAGTTCAGAGAGGCCA
AACGTCATCGTCCCCTGATCGTGTTACCACCCAAAGACCCCGCCCACGGGGGAGCCTCTTCGGAGATGTC
CAGCAACCATCAGTGA

Translation (191 aa):
MGGSVAGFQVPMGIPVGKSMLVLLISLAFALCCIAAYGPGETLCGGELVDTLQFVCSDRGFYFSRPSSRA
NRRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTSQAVLPDDFPRYPVGKFFQYDTWRQSAGRLRRG
LPALLRARRGRMLAKELKEFREAKRHRPLIVLPPKDPAHGGASSEMSSNHQ


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