NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22041.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22041.1 Public Mus musculus 7 Slc22a18 23 108 98 CCDS HistoryNCBI Gene:18400Re-query CCDS DB by CCDS ID:22041.1Re-query CCDS DB by GeneID:18400See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22041.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052348.11 ENSMUSP00000056082.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052348.11Link to Ensembl Protein Viewer:ENSMUSP00000056082.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000052348Re-query CCDS DB by Protein ID:ENSMUSP00000056082
Original member Current member EBI ENSMUST00000105917.2 ENSMUSP00000101537.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105917.2Link to Ensembl Protein Viewer:ENSMUSP00000101537.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105917Re-query CCDS DB by Protein ID:ENSMUSP00000101537
Original member Current member NCBI NM_001042760.2 NP_001036225.1 Accepted alive Link to Nucleotide Sequence:NM_001042760.2Link to Protein Sequence:NP_001036225.1Re-query CCDS DB by Nucleotide ID:NM_001042760Re-query CCDS DB by Protein ID:NP_001036225Link to BLAST:NP_001036225.1
Original member Current member NCBI NM_008767.3 NP_032793.2 Accepted alive Link to Nucleotide Sequence:NM_008767.3Link to Protein Sequence:NP_032793.2Re-query CCDS DB by Nucleotide ID:NM_008767Re-query CCDS DB by Protein ID:NP_032793Link to BLAST:NP_032793.2

Chromosomal Locations for CCDS 22041.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 143476198 143476305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143479285 143479382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143479720 143479880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143480390 143480522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143490812 143490924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143491746 143491853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143492842 143492942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143496951 143497052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143497310 143497430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143499085 143499272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGTCTGGCAGCATGGCTGCTCTGCCCCGGCAGGGGATCATCATACTCACCTATGTGCTGGCAGCCCTGG
AGCTAACGTGTCTCTTCATGCAGTTCTCCATCCTACCATATCTGTCTCGGACACTGGGCCTAGATTCTGT
CTCCTTTGGCTACCTACAGACAACCTTTGGGGTGCTTCAGCTGTTGGGTGGGCCTGTGTTCGGCAGGTTC
GCAGACCAGTGCGGGGCAAGAGCGGCACTCTCACTCTCCTTCCTGGCGGCCTCTGCTCTGTACCTGCTCC
TGGTGGCCTCCTGTAGCCCAGCCCTGCCTGGTGTCTTCCTGCTCTTCGCCTCACGCATACCCTCTGCCCT
CATGCACACACTTCCAGCCGCCCAGATGGTCATCACTGATCTGACAGCGCCCACAGAGCGGCCCGCAGCA
CTGGGCCGGCTGGGCCTCTGCTTTGGCATTGGAATTATCTTCGGCTCCCTACTTGGCGGGACCCTTAACA
CCGCATACGGGATCCAGTGTCCTGCCATCCTGGCTTTTGTGGTCACCCTCCTAGGAGCTGTCCTCAGCTT
TACCTGTGTCCCTGCTACCACCAAGGAGGCCAGTGTCCAGTCAGCTCCTCAGGGTGGAACCAAGGCCAGT
GTATTTGACCTGAAGGCCATCACCCGCCTGCTACTGCTGCCTAGAGTGCTGCCTGTATTCCTGGTCAAGG
TAATCTCTGGCCTCCCTTCAGGACTCTTCTTGGTGATGTTTTCCATCATCTCTATGGACTTCTTCCAGCT
GGAGGCTGCACAGGCTGGCTACCTCATGTCCTTCTTCGGGATCCTCCAGATGATGATCCAAGGCCTGGTC
ATTGGGAGGCTGAGCACCCATTTTCCAGAGGAAGCCTTGCTGCGATCCAGTGTGCTGGTCTTTGCTGTTG
TGGGACTGGGCATGGCGCTGATGTCCAGTGTGCTCCATTTCTGTTTTCTGATGCCTGGGCTGGTATTCAG
TCTCTGTACTCTCAACGTAGTCACAGACAGCATGCTGACCAAGGCTGTGTCCGCTTCAGACACAGGGACC
ATGCTGGGCCTCTCTGCATCTGTGCAACCATTGACCCGAACTCTAGGACCCACCCTAGGTGGCCTGCTGT
ACCGTAGCTATGGTGTCCCCATCTTTGGCCATGTGCAGCTCATGGTGAACTTGCTTGTCCTATTGGTCCT
TTGGAAGAAGCCATTGTCCCAGAAGGGAGAAAAAGCCCGGTGA

Translation (410 aa):
MSGSMAALPRQGIIILTYVLAALELTCLFMQFSILPYLSRTLGLDSVSFGYLQTTFGVLQLLGGPVFGRF
ADQCGARAALSLSFLAASALYLLLVASCSPALPGVFLLFASRIPSALMHTLPAAQMVITDLTAPTERPAA
LGRLGLCFGIGIIFGSLLGGTLNTAYGIQCPAILAFVVTLLGAVLSFTCVPATTKEASVQSAPQGGTKAS
VFDLKAITRLLLLPRVLPVFLVKVISGLPSGLFLVMFSIISMDFFQLEAAQAGYLMSFFGILQMMIQGLV
IGRLSTHFPEEALLRSSVLVFAVVGLGMALMSSVLHFCFLMPGLVFSLCTLNVVTDSMLTKAVSASDTGT
MLGLSASVQPLTRTLGPTLGGLLYRSYGVPIFGHVQLMVNLLVLLVLWKKPLSQKGEKAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH