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Report for CCDS22104.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22104.1 Public Mus musculus 8 F7 23 108 98 CCDS HistoryNCBI Gene:14068Re-query CCDS DB by CCDS ID:22104.1Re-query CCDS DB by GeneID:14068See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22104.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033820.3 ENSMUSP00000033820.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033820.3Link to Ensembl Protein Viewer:ENSMUSP00000033820.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000033820Re-query CCDS DB by Protein ID:ENSMUSP00000033820
Original member NCBI NM_010172.4 NP_034302.2 Updated not alive Link to Nucleotide Sequence:NM_010172.4Link to Protein Sequence:NP_034302.2Re-query CCDS DB by Nucleotide ID:NM_010172Re-query CCDS DB by Protein ID:NP_034302
Current member NCBI NM_010172.5 NP_034302.2 Accepted alive Link to Nucleotide Sequence:NM_010172.5Link to Protein Sequence:NP_034302.2Re-query CCDS DB by Nucleotide ID:NM_010172Re-query CCDS DB by Protein ID:NP_034302Link to BLAST:NP_034302.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034302.2 446 P70375 446 100% 0 0

Chromosomal Locations for CCDS 22104.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 13026059 13026131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13028644 13028804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13030557 13030581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13030658 13030771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13032185 13032325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13033376 13033485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13033941 13034064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13034724 13035316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGGTTCCACAGGCGCATGGGCTGCTGCTTCTCTGCTTTCTGCTCCAGCTCCAGGGACCTCTAGGGACTG
CAGTTTTCATAACCCAGGAGGAAGCACATGGTGTCCTACACAGGCAAAGGCGTGCCAACTCACTCCTGGA
GGAGCTTTGGCCCGGCTCTCTGGAGAGAGAGTGCAATGAGGAACAGTGCTCCTTTGAGGAGGCCCGGGAG
ATCTTCAAGAGCCCTGAGAGGACCAAGCAGTTCTGGATTGTTTACAGTGATGGGGACCAGTGTGCCTCGA
ATCCATGTCAGAACGGAGGTACCTGCCAGGATCATCTCAAGTCTTACGTCTGCTTCTGCCTCCTAGACTT
TGAGGGTCGGAACTGTGAGAAAAGCAAGAATGAGCAGCTGATCTGTGCAAATGAAAATGGTGACTGTGAC
CAGTACTGCAGGGACCATGTAGGGACCAAGCGTACCTGTAGCTGTCATGAGGACTACACGCTACAGCCAG
ATGAGGTGTCCTGCAAACCAAAAGTTGAGTACCCGTGTGGGAGAATACCTGTTGTAGAAAAAAGAAACTC
CAGCAGCCGCCAAGGCCGCATTGTGGGAGGCAACGTGTGCCCCAAAGGGGAGTGTCCATGGCAGGCTGTG
CTGAAAATCAATGGGTTATTGCTGTGTGGGGCCGTCCTGCTGGACGCCAGATGGATAGTGACCGCAGCCC
ACTGCTTCGATAATATCCGCTACTGGGGAAACATCACAGTGGTGATGGGTGAACATGACTTCAGTGAGAA
GGATGGGGATGAGCAAGTACGACGGGTGACACAGGTCATCATGCCCGACAAGTACATCCGCGGCAAGATC
AACCACGACATTGCCCTGCTCCGCCTTCACCGGCCTGTGACCTTCACTGACTACGTGGTGCCCCTGTGTC
TGCCTGAAAAGTCCTTCTCCGAGAACACCCTAGCCAGAATCCGCTTCTCAAGGGTCAGTGGCTGGGGCCA
GCTACTGGACCGTGGTGCCACAGCCCTGGAACTCATGTCCATCGAGGTGCCCCGGCTGATGACCCAGGAC
TGTCTGGAGCACGCCAAGCACAGCTCTAACACCCCCAAAATCACAGAGAACATGTTCTGCGCTGGCTACA
TGGATGGTACCAAGGACGCCTGCAAGGGTGACAGCGGTGGCCCACATGCCACGCACTACCATGGCACATG
GTATCTGACAGGTGTGGTCAGCTGGGGGGAGGGCTGTGCAGCTATTGGTCACATTGGGGTGTACACCAGG
GTCTCCCAGTACATAGACTGGCTGGTCAGACACATGGACTCCAAGCTCCAGGTTGGGGTTTTCCGACTCC
CACTACTGTAG

Translation (446 aa):
MVPQAHGLLLLCFLLQLQGPLGTAVFITQEEAHGVLHRQRRANSLLEELWPGSLERECNEEQCSFEEARE
IFKSPERTKQFWIVYSDGDQCASNPCQNGGTCQDHLKSYVCFCLLDFEGRNCEKSKNEQLICANENGDCD
QYCRDHVGTKRTCSCHEDYTLQPDEVSCKPKVEYPCGRIPVVEKRNSSSRQGRIVGGNVCPKGECPWQAV
LKINGLLLCGAVLLDARWIVTAAHCFDNIRYWGNITVVMGEHDFSEKDGDEQVRRVTQVIMPDKYIRGKI
NHDIALLRLHRPVTFTDYVVPLCLPEKSFSENTLARIRFSRVSGWGQLLDRGATALELMSIEVPRLMTQD
CLEHAKHSSNTPKITENMFCAGYMDGTKDACKGDSGGPHATHYHGTWYLTGVVSWGEGCAAIGHIGVYTR
VSQYIDWLVRHMDSKLQVGVFRLPLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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