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Report for CCDS22156.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22156.1 Public Mus musculus 8 Defa39 23 108 98 CCDS HistoryNCBI Gene:382000Re-query CCDS DB by CCDS ID:22156.1Re-query CCDS DB by GeneID:382000See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22156.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071886.6 ENSMUSP00000071783.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071886.6Link to Ensembl Protein Viewer:ENSMUSP00000071783.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000071886Re-query CCDS DB by Protein ID:ENSMUSP00000071783
Original member Current member NCBI NM_001007582.3 NP_001007583.1 Accepted alive Link to Nucleotide Sequence:NM_001007582.3Link to Protein Sequence:NP_001007583.1Re-query CCDS DB by Nucleotide ID:NM_001007582Re-query CCDS DB by Protein ID:NP_001007583Link to BLAST:NP_001007583.1

Chromosomal Locations for CCDS 22156.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 21702628 21702806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21703431 21703602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (351 nt):
ATGAAGACACTTGTCCTCCTCTCTGCCCTTGCCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCAAAA
AC
ACAGATGAAGAGACTAAAACTGGGGAGCAGCCAGAGGAAGAGGACCAGGCTGTTTCTGTCTCCTTTGG
A
GGCACAGAAGGCTCTGCTCTTCAATATGTAGCCCAAAGAAGGTTTCCGTGGTGCCGGAAGTGCCCAGTG
TGC
CAGAAGTGCCAAGTGTGCCAGAAGTGCCCTGTGTGCCCGACATGCCCCCAGTGCCCGAAGCTGCCAT
TG
TGCAAAGAAAGGCAAAATAAAAGTGCAATCACCACCCAAGCTCCAAATACACAGCATAAAGGCTGTTG
A


Translation (116 aa):
MKTLVLLSALALLAFQVQADPIKNTDEETKTGEQPEEEDQAVSVSFGGTEGSALQYVAQRRFPWCRKCPV
C
QKCQVCQKCPVCPTCPQCPKLPLCKERQNKSAITTQAPNTQHKGC




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser