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Report for CCDS22169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22169.1 Public Mus musculus 8 Nek3 23 108 98 CCDS HistoryNCBI Gene:23954Re-query CCDS DB by CCDS ID:22169.1Re-query CCDS DB by GeneID:23954See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22169.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033865.15 ENSMUSP00000033865.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033865.15Link to Ensembl Protein Viewer:ENSMUSP00000033865.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000033865Re-query CCDS DB by Protein ID:ENSMUSP00000033865
Original member NCBI NM_011848.4 NP_035978.2 Updated not alive Link to Nucleotide Sequence:NM_011848.4Link to Protein Sequence:NP_035978.2Re-query CCDS DB by Nucleotide ID:NM_011848Re-query CCDS DB by Protein ID:NP_035978
Current member NCBI NM_011848.5 NP_035978.2 Accepted alive Link to Nucleotide Sequence:NM_011848.5Link to Protein Sequence:NP_035978.2Re-query CCDS DB by Nucleotide ID:NM_011848Re-query CCDS DB by Protein ID:NP_035978Link to BLAST:NP_035978.2

Chromosomal Locations for CCDS 22169.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22128685 22128790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22129345 22129468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22131206 22131337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22132050 22132193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22132993 22133095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22142890 22142939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22146931 22147003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22148483 22148683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22149861 22149915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22156976 22157062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22157150 22157217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22158627 22158710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22160192 22160289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22160370 22160457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22162324 22162440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGGACAACTACACAGTCCTGAGAGTGATTGGCCAGGGCTCCTTCGGCAGGGCTCTTTTGGTTCTGCAGG
AAAGCAGCAATCAGACATTTGCCATGAAGGAAATCAGACTGCTCAAGTCTGATACACAGACTTCTAGGAA
AGAGGCTGTTCTGCTCGCCAAAATGAAGCACCCCAATATTGTTGCCTTTAAGGAGTCATTTGAAGCTGAA
GGGTACCTGTACATTGTGATGGAGTATTGTGACGGAGGGGATCTGATGCAGAGGATTAAACAGCAAAAAG
GGAAGTTATTCCCTGAAGACACGATACTTAATTGGTTTATACAAATTTGTCTTGGAGTAAATCACATTCA
TAAGAGACGTGTTTTACACAGAGATATCAAGTCGAAAAATGTCTTCCTCACCCACAATGGAAAAGTGAAA
TTGGGAGATTTTGGCTCTGCCCGTCTTCTCTCCAGTCCCATGGCGTTTGCATGCACGTACGTGGGAACAC
CTTATTATGTGCCTCCAGAAATCTGGGAGAACCTGCCTTACAACAATAAAAGTGACATCTGGTCCTTGGG
ATGCATTCTGTATGAACTCTGCGCTCTGAAGCATCCATTCCAGGCAAATAGTTGGAAAAACCTGATCCTG
AAAATATGCCAGGGGCCCATCCACCCGCTGCCGGCTCTGTACTCCTGCAAGCTTCAGGGCCTGGTCAAGC
AGATGCTGAAAAGGAACCCTTCCCACCGCCCCTCCGCCACAACCCTGCTCTGCAGGGGTAGCTTGGCTCC
ACTGGTCCCGAAGTGCTTGCCCCCTCAGATCATCAGAGAATATGGAGAACAGATATTAGATGAAATCAAA
ATATCCACGCCTAAGAATATGAAAAAACAGGACTCCAACAGAGTCAGGAGAGCTCTGGGAGAAGCAAACT
CTGCCTCTATGCAAGAGGAAGAACGTGGTAGAAAGTGTAGCCATACTGAATTGGAAAGCACTGGTACAAC
CCCAGCTGGGAATGCATTGGAAAGAGCAGCCAGAGGAAATCCAGGTAACCCACAGGAGCACGGGAGGCAT
ACCAGTCCGGCAAGTCCTCACAGGCCGTGGTGGGAGAGACACGGTCCCAGTTCCAATGTCGAAGCTTTGG
AGAAAGCATCTATCCTTACCTCCAGTTTCACGGCAGAGGATGACAGAGGTGGGTCTGTGATAAAGTATGA
AGAAAATGCCCGAAGGCAGTGGGTCAGAGAGCCCCCTGAGGCCTTGCTGTCAATGCTGAAGGACGCTGAT
CTCAGTCAGGCATTTCAGACATACACAATATATAGACCAGGTGCAGAAGGATTCCTGAAAGGTCCCCTTT
CTGAAGACACGGCATCGGACAGCGTCGACGGTGATCTCGATTCTGTCATGTTAGACCCAGAGAGATTTGA
ACCTCGGCTGGATGAAGAAGACACGGACTTTGAGGAAGATAACGAAAACCCTGATTGGGTGTCAGAACTA
AAGAAGCACGTAGGATACGGGGATGGACCTGGTGGACAACTCCTCGGAGAACGTGCCTGA

Translation (509 aa):
MDNYTVLRVIGQGSFGRALLVLQESSNQTFAMKEIRLLKSDTQTSRKEAVLLAKMKHPNIVAFKESFEAE
GYLYIVMEYCDGGDLMQRIKQQKGKLFPEDTILNWFIQICLGVNHIHKRRVLHRDIKSKNVFLTHNGKVK
LGDFGSARLLSSPMAFACTYVGTPYYVPPEIWENLPYNNKSDIWSLGCILYELCALKHPFQANSWKNLIL
KICQGPIHPLPALYSCKLQGLVKQMLKRNPSHRPSATTLLCRGSLAPLVPKCLPPQIIREYGEQILDEIK
ISTPKNMKKQDSNRVRRALGEANSASMQEEERGRKCSHTELESTGTTPAGNALERAARGNPGNPQEHGRH
TSPASPHRPWWERHGPSSNVEALEKASILTSSFTAEDDRGGSVIKYEENARRQWVREPPEALLSMLKDAD
LSQAFQTYTIYRPGAEGFLKGPLSEDTASDSVDGDLDSVMLDPERFEPRLDEEDTDFEEDNENPDWVSEL
KKHVGYGDGPGGQLLGERA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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