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Report for CCDS22254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22254.1 Public Mus musculus 8 Vps37a 23 108 98 CCDS HistoryNCBI Gene:52348Re-query CCDS DB by CCDS ID:22254.1Re-query CCDS DB by GeneID:52348See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22254.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098817.3 ENSMUSP00000096415.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098817.3Link to Ensembl Protein Viewer:ENSMUSP00000096415.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098817Re-query CCDS DB by Protein ID:ENSMUSP00000096415
Original member Current member NCBI NM_033560.3 NP_291038.2 Accepted alive Link to Nucleotide Sequence:NM_033560.3Link to Protein Sequence:NP_291038.2Re-query CCDS DB by Nucleotide ID:NM_033560Re-query CCDS DB by Protein ID:NP_291038Link to BLAST:NP_291038.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_291038.2 397 Q8CHS8-1 397 100% 0 0

Chromosomal Locations for CCDS 22254.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 40512109 40512233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40526927 40527001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40528318 40528432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40529109 40529209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40536870 40537095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40539310 40539380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40540679 40540806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40540889 40540947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40541025 40541093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40543810 40543953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 40544944 40545024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGAGCTGGCTCTTTCCCCTGGCGAAGAGCGCGTCATCCTCCGCGGCTGGGTCCCCTGCCGGCCTCACCA
GTCTCCAGCAGCAGAAGCAGCGGCTGATCGAGTCACTCCGGAACTCCCATTCCAGTATAGCTGAAATACA
AAAAGATGTGGAATACAGATTGCCATTCACAGTAAACAACCTGACAATTAACATTAATATATTACTTCCT
CCACAGTTTCCTCAGGAAAAGCCAGTGATTAGTGTTTATCCGCCAATCAGACATCATTTAATGGATAGTC
AAGGATTATATGTTACCTCTCCATTAGTAAGCAATTTTACAATGCACTCAGATCTTGGAAAAATTATTCA
AAGTCTTTTGGATGAGTTCTGGAAGAATCCTCCAGTTTTAGCTCCTACTTCAACAACATTTCCATACCTG
TATAGTAATCCAGGTGGGATGCCTCCGTACCCCTCCCAGGGGTTTCCATTTCTTCCTCCATATCCTCCAC
CAGAAGCTAACAGGAATATCACATCCTTGTCTGTAGCTGACACTGTTTCTTCTTCAACCACAAGTTACAC
TGCAGCTAAGCCCGTGGCGCCTTCATTTGGCATCCTTTCAAGTCTGCCATTACCAGTTCCCACAACTGAA
TCTTCAGCATCGGTTAACCAAAATGGTTTTGGTTATAAGATGCCGGATATTCCTGATGCATTTCCAGAAC
TTTCAGAACTAAGTGTGTCACAGCTCACAGATATGAATGAACAGGAGGAGGTATTACTAGAACAGTTTCT
GATGTTGCCTCAACTAAAACAAATTATTACTGACAAGGAAGACTTAGTAAAAAATATCGAGGAATTAGCA
AGAAAAAATCTCCTTTTGGAACATAGCTTGGAAGGCAAAAGGCAAACCGTTTTAGATAAGTATGAATTAC
TTCTACAAATGAAATCTACCTTTGAAAAGAAGATGCAAAGGCAACATGAACTCAGTGAGAGTTGTAGTGC
AAGTGCTCTACAGGCAAGATTGAAAGTAGCTGCACACGAAGCTGAGGAAGAATCGGATAATATTGCTGAA
GACTTCTTGGAGGGAAAAACTGAAATAGATGATTTTCTCAATAGCTTCAAGGAAAAGAGAACAATTTGCC
ACTGTAGAAGAGCTAAAGAAGAGAAGCTTCACCAGGTGATAGCGATGCACAGCCAATTTCATGCTCCTCT
CTAG

Translation (397 aa):
MSWLFPLAKSASSSAAGSPAGLTSLQQQKQRLIESLRNSHSSIAEIQKDVEYRLPFTVNNLTININILLP
PQFPQEKPVISVYPPIRHHLMDSQGLYVTSPLVSNFTMHSDLGKIIQSLLDEFWKNPPVLAPTSTTFPYL
YSNPGGMPPYPSQGFPFLPPYPPPEANRNITSLSVADTVSSSTTSYTAAKPVAPSFGILSSLPLPVPTTE
SSASVNQNGFGYKMPDIPDAFPELSELSVSQLTDMNEQEEVLLEQFLMLPQLKQIITDKEDLVKNIEELA
RKNLLLEHSLEGKRQTVLDKYELLLQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAE
DFLEGKTEIDDFLNSFKEKRTICHCRRAKEEKLHQVIAMHSQFHAPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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