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Report for CCDS22277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22277.1 Public Mus musculus 8 Fam149a 23 108 98 CCDS HistoryNCBI Gene:212326Re-query CCDS DB by CCDS ID:22277.1Re-query CCDS DB by GeneID:212326See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22277.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093526.12 ENSMUSP00000091245.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093526.12Link to Ensembl Protein Viewer:ENSMUSP00000091245.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000093526Re-query CCDS DB by Protein ID:ENSMUSP00000091245
Original member Current member NCBI NM_153535.2 NP_705763.1 Accepted alive Link to Nucleotide Sequence:NM_153535.2Link to Protein Sequence:NP_705763.1Re-query CCDS DB by Nucleotide ID:NM_153535Re-query CCDS DB by Protein ID:NP_705763Link to BLAST:NP_705763.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705763.1 787 Q8CFV2 787 100% 0 0

Chromosomal Locations for CCDS 22277.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 45339299 45339372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45340983 45341061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45341156 45341284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45342391 45342514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45344458 45344661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45344972 45345084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45348442 45348596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45348951 45349141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45350401 45350571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45351663 45351788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45353819 45353961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45355232 45355370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45355622 45355729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45381153 45381760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2364 nt):
ATGAAGGTCGCTGTGTTGGACCTGGGGTCTCTGTTTGCCAAGATCTTCAAGCTCTCAACAGCATCCCCGG
CA
GTCTCCAGCCACCCTGGAGGCGCGGCGGCCACAGGATCAGTAGACTCCGGCGCCAGCACGTCGCTTAG
A
GAGGCTGAGACCCTGACTTTGCTCCCATCTCTGCCTCCAGACACCGCGGCCTCACGGGAGCCCTTCACC
CCG
GTGCACACTCCGCTCCCTGCCTCGCACCCCAGGAGCTCCGCAGCTGCTCAAAGGGTAGAAGCAACAG
GG
TGTTCCGGATCTCTGCCCAGCAGCTCAGGAGCATCCATAGCACCGCCCTTAACCCCCTACAGTGGCTC
T
GCCGGCTCAGTGGCTTCAGTGACTTTACCCAGCCCAGGGGTTGACTGGGCGACCCTGCCTTCTGTCACC
ATC
CCCTTGGGCAGCAACAGCGTCACAGCATCAAGTCCACGGAACCCTCGCCAGCTGCGAGCTCCTGGAG
AG
CGAGAGCCCAGTGTATGGATGGCCCCGGGTCCGGTTCCCAAAACTCTGTTTTTCACCTTGCCTGACAT
T
GGCGAGGAATGGACCTCGGACAGCGACTCCCAGGATGACCCAGAAGGAAGGGGGCTCTCGGAAGGACTC
AGG
AAGCAGAGCTCTGAAAAGAGCAAAGATCCTTTACCTACGAATTTTACGAGAAACGTGCAGAAAGCCA
TT
GATAAATTCGCCAGCGAGTCCCCCTCATCATTTTCATCCAGTGGGAGCCGGACGCCCACAGAGGCCCA
C
AACTCATGGCCTGGCTCTTCTACACAGAGCTCTACCACGGGATTGTCTACGGAGCGGAGCTCGGTTTCT
TCT
TGGAGAGATGATGAATTTGACAAAGTCAGTGCACAGAAAGTCCACCAGCTGTTTTGGGAGGTTGAGG
AA
CTGCTATTTGAAGGGAAAGTGAGTCCCCAGACCCAGAATCTCCTGGCTGAATGCAGCGAATGGGCAAG
A
AGGTCCCTCCATCTCAGGGTGGTAGGAAGACAGCTCGTCCCACCCACCGATGAAGGCTTCCAACATTTC
CAG
GGGAGCCTGCCTAGTTCTGCTACTCACGAAGCTTTACCTCATGTCCCTGACCACACCAGCAGCAGCA
GA
GAGCTGTGTATCTCTGGCTCTCAGATAGTCCCTGAGGTACACTCAGCCTCAGCCCTGACAGACCCTGA
T
GGCACGGAATCGGCTGACCTCACATCATGCTCATCCCTGAAAGAAGAGGTGTACCATGTGGATGGAAAC
ATT
GAAGAATATTTTGCCTTCGACAGAAAGCAGGATGGAGATGAGCATCTTGGACAAAGCCCAGCACTCC
GT
GGCAGGAAGAGGCATCGCCATGGGCTTCCTCCCATTTCCCCTGATGACTGCATCAGAGATGCTGTGGC
A
GCAGAAGTGTTTGACCACGTGTGGACCAATGTGGTAGAAATCCTGGAAGACCTCATTAGAAAAACCTGG
GAA
TCTGCACTCACAGGTGGGAAAAAACATAAGGAAAAACTAAAAGTAGCTGAGAACAGATCTCCACACG
TG
CTCATGTCCCGTCTCAGCACCGATGTTTGCAGTGTCCCCCCATCCCGAAGCTCTGATACGCTCCAGCC
A
TCCTTGGCTCCCCACTTTAACCCACCCCAGTTTCCTCAGCTCCATCGCTTCTCCAGCAACTTCTACAGT
GAC
TTGAGCGGTGTGATGACGATTCAAGCCAAACCACTCCAGCAGAGACCCACTTATTCTGCAGATAGAA
CA
CAAAATGACCAAGATGACAAACTGCCTGGAGGAGGGGTCGGAGCATCTTCCCGGCACCGACTTGGCCG
A
ATTCTAGATGCCCGAGGGCCACAGACTTCAGTCAAGAAGACACCAGTGCACAGGAGACTGCCTTCAATT
GCC
TCAGACCCACAGAGGCTGAAAACCCCCACTGTCTACAGTGATGAAATTCTGAGAGGAACCAAACTGC
AA
ACTGGCATTGACTACCTGCCTTCCCCAGCAGCAGTGCAAACCTCCCGGAGCCGGTTACCCCCAATAGG
C
TCTGAGACTGGGGAGCCCAACACGGCAGCCTCAGGGTCCCGCCCTGTTTCTTACAGGGGAAGGCACCCA
CAA
AGCCGTGTGTTCAGCGCAATGCCTGACAGCATCGAACGGTCACCCCTTCGAGAAAGGACCATTGTAT
TG
GAACAGCTTTCAAGGCCCAGCACAACACACACATTCCGGTCAGACACACCTCGAAAAGGCTCCCTGAC
A
CCCGTGGAGTTTGTGGCTCACACTTGGACGGGTCAAAGTATTTTGACAGGTTCACAGTATCTGCCCAAA
TCT
TATCAGAGGGCAACCCTGACTGCAAGAAAGAGGTTCCAAGTGGCCTCGTAA


Translation (787 aa):
MKVAVLDLGSLFAKIFKLSTASPAVSSHPGGAAATGSVDSGASTSLREAETLTLLPSLPPDTAASREPFT
P
VHTPLPASHPRSSAAAQRVEATGCSGSLPSSSGASIAPPLTPYSGSAGSVASVTLPSPGVDWATLPSVT
I
PLGSNSVTASSPRNPRQLRAPGEREPSVWMAPGPVPKTLFFTLPDIGEEWTSDSDSQDDPE
GRGLSEGL
R
KQSSEKSKDPLPTNFTRNVQKAIDKFA
SESPSSFSSSGSRTPTEAHNSWPGSSTQSSTTGLSTERSSVS
S
WRDD
EFDKVSAQKVHQLFWEVEELLFEGKVSPQTQNLLAECSEWARRSLHLRVVGRQLVPPTDEGFQHF
Q
GSLPSSATHEALPHVPDHTSSSR
ELCISGSQIVPEVHSASALTDPDGTESADLTSCSSLKEEVYHVDGN
I
EEYFAFDRKQ
DGDEHLGQSPALRGRKRHRHGLPPISPDDCIRDAVAAEVFDHVWTNVVEILEDLIRKTW
E
SALT
GGKKHKEKLKVAENRSPHVLMSRLSTDVCSVPPSRSSDTLQPSLAPHFNPPQFPQLHRFSSNFYS
D
LSGVMTIQAKPLQQRPTYSADRT
QNDQDDKLPGGGVGASSRHRLGRILDARGPQTSVKKTPVHRRLPSI
A
SDPQRLKTPTVYSDEILRGTK
LQTGIDYLPSPAAVQTSRSRLPPIGSETGEPNTAASGSRPVSYRGRHP
Q
SRVFSAMPDSIERSPLRERTIVLEQLSRPSTTHTFR
SDTPRKGSLTPVEFVAHTWTGQSILTGSQYLPK
S
YQRATLTARKRFQVAS




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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