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Report for CCDS22456.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22456.1 Public Mus musculus 8 Dnajb1 23 108 98 CCDS HistoryNCBI Gene:81489Re-query CCDS DB by CCDS ID:22456.1Re-query CCDS DB by GeneID:81489See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22456.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005620.9 ENSMUSP00000005620.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005620.9Link to Ensembl Protein Viewer:ENSMUSP00000005620.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000005620Re-query CCDS DB by Protein ID:ENSMUSP00000005620
Original member Current member NCBI NM_018808.3 NP_061278.1 Accepted alive Link to Nucleotide Sequence:NM_018808.3Link to Protein Sequence:NP_061278.1Re-query CCDS DB by Nucleotide ID:NM_018808Re-query CCDS DB by Protein ID:NP_061278Link to BLAST:NP_061278.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061278.1 340 Q9QYJ3 340 100% 0 0

Chromosomal Locations for CCDS 22456.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 83608332 83608542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83609814 83610394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83610589 83610819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGGGCAAGGACTACTATCAGACGCTGGGCCTGGCCCGCGGCGCGTCCGACGACGAGATCAAGCGAGCCT
ACCGCCGCCAGGCGCTGCGCTACCACCCGGACAAGAACAAGGAGCCCGGCGCTGAGGAGAAGTTCAAGGA
GATCGCCGAGGCCTACGACGTGCTCAGCGACCCGCGCAAGCGCGAGATTTTCGACCGCTATGGAGAGGAA
GGCCTGAAGGGTGGTAGCCCCAGTGGAGGAAGCAGTGGTGGTGCTAATGGTACCTCTTTCAGCTACACAT
TCCACGGAGACCCCCATGCCATGTTTGCTGAGTTCTTCGGTGGCAGAAACCCCTTTGATACCTTTTTTGG
GCAGCGCAACGGGGAAGAAGGCATGGACATTGATGACACATTCTCTAGCTTTCCAATGGGTATGGGTGGC
TTCACCAACATGAACTTTGGACGTTCCCGCCCTTCTCAAGAGCCCACCCGGAAGAAGCAAGATCCTCCAG
TCACCCATGACCTTCGGGTCTCCCTTGAAGAGATCTACAGCGGCTGTACCAAGAAGATGAAAATCTCCCA
CAAGCGGCTGAACCCTGATGGAAAGAGCATTCGAAATGAAGATAAGATCCTGACCATCGAAGTGAAGAGG
GGCTGGAAAGAAGGGACCAAAATCACCTTTCCCAAGGAAGGGGACCAGACCTCGAACAACATTCCAGCAG
ACATCGTCTTTGTTTTAAAGGACAAGCCACACAATATCTTCAAGAGAGATGGTTCTGATGTCATCTATCC
AGCCAGGATTAGCCTTCGGGAGGCTCTCTGTGGTTGCACTGTGAATGTCCCTACTCTGGACGGCAGGACC
ATCCCTGTTGTATTCAAAGATGTCATCAGGCCTGGTATGCGGCGGAAAGTCCCTGGAGAAGGCCTCCCTC
TCCCCAAAACACCTGAGAAACGTGGAGACCTTGTTATCGAGTTTGAAGTGATCTTCCCGGAAAGGATTCC
CGTCTCATCCAGAACCATCCTGGAGCAGGTTCTTCCCATATAG

Translation (340 aa):
MGKDYYQTLGLARGASDDEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE
GLKGGSPSGGSSGGANGTSFSYTFHGDPHAMFAEFFGGRNPFDTFFGQRNGEEGMDIDDTFSSFPMGMGG
FTNMNFGRSRPSQEPTRKKQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKR
GWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRT
IPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLVIEFEVIFPERIPVSSRTILEQVLPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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