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Report for CCDS22474.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22474.1 Public Mus musculus 8 Ier2 23 108 98 CCDS HistoryNCBI Gene:15936Re-query CCDS DB by CCDS ID:22474.1Re-query CCDS DB by GeneID:15936See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22474.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060427.5 ENSMUSP00000060275.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060427.5Link to Ensembl Protein Viewer:ENSMUSP00000060275.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000060427Re-query CCDS DB by Protein ID:ENSMUSP00000060275
Original member Current member NCBI NM_010499.4 NP_034629.3 Accepted alive Link to Nucleotide Sequence:NM_010499.4Link to Protein Sequence:NP_034629.3Re-query CCDS DB by Nucleotide ID:NM_010499Re-query CCDS DB by Protein ID:NP_034629Link to BLAST:NP_034629.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034629.3 221 P17950 221 100% 0 0

Chromosomal Locations for CCDS 22474.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84662086 84662751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGGAAGTACAGAAAGAAGCGCAGCGCATCATGACTCTGTCGGTATGGAAGATGTACCACTCTCGCATGC
AG
CGAGGTGGCTTGCGACTCCACCGGAGTCTGCAGCTGTCCCTCGTTATGCGCAGCGCTCGAGAGGTCTA
C
CTCTCAGCCAAGGTAGAAGCCCACCAGCCCGAGTTCCCGCCATCCCGCAGGGCTCTTGACCCTCGCCTG
CAC
CCGCCGCGGGAAGCCGAAGTTGCAGTGGAAGTAGCGTCCCCCGAAGCCGTGCAGCCTCCGGAGCCCA
TG
GATACGCAAGAGGAAGTGCTGCGAGTCCAGGAGACCCCTGCGCTCTGTGACCCGCCCCCCGCTAGAGT
C
AGCCGCAAGCGCCGGAGCAGCAGCGATTTGAGCGACGGTAGTGATGCCGGACTGGTACCAAGCAAGAAG
GCC
CGTCTAGAAGAGGTGGAGGGGGAGGCGACGTCGGAGGTTCCCGATCGCCTGCAGCTTCCTCCGGCAC
AA
AGCGAAGGTGCCTTCCCTAACCTCGCCCGCGTCCTCCAAAGGCGCTTCTCCAGTCTCCTGAACTGTGG
A
CCCGCCGTGCCCCCGCCGACGCCCCCCACGTGCGAGGCCAAGCCAGCCTGCCGCCCGGCCGACAATATG
CTC
AACGTGCTGGTGCGAGCTGTGGTGGCCTTCTGA


Translation (221 aa):
MEVQKEAQRIMTLSVWKMYHSRMQRGGLRLHRSLQLSLVMRSAREVYLSAKVEAHQPEFPPSRRALDPRL
H
PPREAEVAVEVASPEAVQPPEPMDTQEEVLRVQETPALCDPPPARVSRKRRSSSDLSDGSDAGLVPSKK
A
RLEEVEGEATSEVPDRLQLPPAQSEGAFPNLARVLQRRFSSLLNCGPAVPPPTPPTCEAKPACRPADNM
L
NVLVRAVVAF




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser