NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22499.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22499.1 Public Mus musculus 8 Gpt2 23 108 98 CCDS HistoryNCBI Gene:108682Re-query CCDS DB by CCDS ID:22499.1Re-query CCDS DB by GeneID:108682See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22499.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034136.11 ENSMUSP00000034136.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034136.11Link to Ensembl Protein Viewer:ENSMUSP00000034136.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034136Re-query CCDS DB by Protein ID:ENSMUSP00000034136
Original member Current member NCBI NM_173866.4 NP_776291.1 Accepted alive Link to Nucleotide Sequence:NM_173866.4Link to Protein Sequence:NP_776291.1Re-query CCDS DB by Nucleotide ID:NM_173866Re-query CCDS DB by Protein ID:NP_776291Link to BLAST:NP_776291.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776291.1 522 Q8BGT5 522 100% 0 0

Chromosomal Locations for CCDS 22499.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 85492927 85493169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85503265 85503354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85505579 85505687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85509179 85509309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85512113 85512356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85516158 85516237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85517977 85518113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85519448 85519622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85521339 85521494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85523256 85523368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85525536 85525626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1569 nt):
ATGCAGCGGGCAGCGGTGCTGGTGCGGCGGGGCTCCTGCCCCCGCGCCTCGGGCCCCTGGGGCCGTAGTC
ACAGCAGCGCTGCAGCCGAAGCCTCGGCGGCGCTCAAGGTGCGACCGGAGCGCAGCCCTCGAGACCGCAT
CCTCACCCTGGAGTCCATGAACCCGCAGGTGAAGGCGGTGGAGTACGCTGTGCGGGGACCCATCGTGCTC
AAAGCCGGCGAGATCGAGATGGAGCTGCAGCGGGGTATCAAAAAACCATTCACTGAGGTAATCCGAGCCA
ACATTGGGGATGCCCATGCTATGGGCCAGCAGCCAATCACCTTCCTCCGTCAGGTGATGGCACTCTGCAC
CTACCCAAACCTACTAAACAGCCCCAGCTTCCCAGAAGACGCTAAGAAACGAGCGCGGCGGATCCTGCAG
GCTTGTGGTGGAAACAGCTTGGGATCTTACAGTGCTAGCCAAGGCGTTAACTGTATCCGTGAAGATGTGG
CAGCCTTTATCACCAGGAGAGATGGTGTGCCTGCAGACCCAGACAACATTTACCTGACTACTGGAGCTAG
CGACGGTATTTCTACAATCCTGAAGCTCCTGGTCTCCGGTGGTGGCAAGTCACGGACCGGCGTGATGATT
CCCATCCCCCAGTATCCCTTGTACTCCGCGGTCATCTCTGAGCTCGACGCGGTGCAGGTCAACTACTATC
TGGATGAAGAGAACTGCTGGGCTTTGAATGTGGACGAGCTCCGGCGGGCATTGCGGCAAGCCAAAGACCA
CTGTGACCCTAAAGTTCTCTGCATTATCAACCCCGGAAACCCCACAGGCCAGGTACAAAGCAGAAAGTGC
ATAGAAGATGTGATTCACTTTGCCTGGGAAGAGAAGCTTTTTCTCCTGGCTGATGAGGTGTACCAGGACA
ACGTGTACTCTCCAGACTGCAGATTCCACTCGTTTAAGAAAGTGCTTTACCAGATGGGGCACGAGTACTC
CAGCAACGTGGAGCTCGCCTCCTTCCACTCCACCTCCAAGGGCTACATGGGCGAGTGTGGCTACAGAGGG
GGCTACATGGAGGTGATCAATTTGCACCCCGAGATCAAAGGCCAGCTGGTGAAGCTACTCTCGGTTCGCC
TCTGTCCGCCAGTGTCAGGACAGGCCGCCATGGACATTGTTGTGAATCCACCGGAACCAGGAGAGGAGTC
CTTTGAGCAATTCAGCAGGGAAAAAGAATTCGTCCTTGGTAATCTGGCCAAAAAAGCAAAGCTGACAGAA
GATCTGTTTAACCAAGTCCCAGGGATCCAGTGCAACCCCTTGCAAGGAGCTATGTATGCGTTCCCTCGGA
TTCTCATCCCTGCCAAGGCCGTGGAGGCAGCTCAGTCCCATAAAATGGCTCCAGACATGTTCTACTGCAT
GAAGCTCCTGGAGGAGACTGGCATCTGTGTCGTGCCTGGCAGTGGCTTTGGGCAGCGAGAAGGCACTTAC
CACTTCAGAATGACCATTCTCCCTCCGGTGGATAAACTGAAGACCGTGCTCCACAAGGTGAAAGACTTTC
ACCTGAAGTTCCTGGAGCAGTACTCATGA

Translation (522 aa):
MQRAAVLVRRGSCPRASGPWGRSHSSAAAEASAALKVRPERSPRDRILTLESMNPQVKAVEYAVRGPIVL
KAGEIEMELQRGIKKPFTEVIRANIGDAHAMGQQPITFLRQVMALCTYPNLLNSPSFPEDAKKRARRILQ
ACGGNSLGSYSASQGVNCIREDVAAFITRRDGVPADPDNIYLTTGASDGISTILKLLVSGGGKSRTGVMI
PIPQYPLYSAVISELDAVQVNYYLDEENCWALNVDELRRALRQAKDHCDPKVLCIINPGNPTGQVQSRKC
IEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYQMGHEYSSNVELASFHSTSKGYMGECGYRG
GYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPEPGEESFEQFSREKEFVLGNLAKKAKLTE
DLFNQVPGIQCNPLQGAMYAFPRILIPAKAVEAAQSHKMAPDMFYCMKLLEETGICVVPGSGFGQREGTY
HFRMTILPPVDKLKTVLHKVKDFHLKFLEQYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH