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Report for CCDS22527.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22527.1 Public Mus musculus 8 Ces1c 23 108 98 CCDS HistoryNCBI Gene:13884Re-query CCDS DB by CCDS ID:22527.1Re-query CCDS DB by GeneID:13884See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22527.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034189.16 ENSMUSP00000034189.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034189.16Link to Ensembl Protein Viewer:ENSMUSP00000034189.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034189Re-query CCDS DB by Protein ID:ENSMUSP00000034189
Original member Current member NCBI NM_007954.4 NP_031980.2 Accepted alive Link to Nucleotide Sequence:NM_007954.4Link to Protein Sequence:NP_031980.2Re-query CCDS DB by Nucleotide ID:NM_007954Re-query CCDS DB by Protein ID:NP_031980Link to BLAST:NP_031980.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031980.2 554 P23953 554 100% 0 0

Chromosomal Locations for CCDS 22527.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 93099165 93099348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93100654 93100726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93104119 93104250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93106560 93106707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93107533 93107613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93108433 93108573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93118304 93118414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93120268 93120372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93123100 93123253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93124459 93124592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93127504 93127648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93130695 93130899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93131207 93131258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1665 nt):
ATGTGGCTCCATGCTCTGGTCTGGGCTTCTCTTGCTGTTTGCCCAATTCTGGGACACTCACTCTTACCAC
CTGTGGTGGACACCACACAAGGCAAAGTCCTGGGGAAGTATATCAGCTTAGAAGGATTTGAACAGCCTGT
GGCCGTCTTCCTGGGAGTCCCCTTTGCCAAGCCCCCTCTTGGATCTCTGAGGTTTGCTCCACCACAGCCT
GCAGAGCCCTGGAGCTTCGTGAAGAATGCCACCTCCTACCCTCCTATGTGCTCCCAAGATGCAGGTTGGG
CAAAGATACTCTCAGATATGTTCAGCACCGAAAAGGAGATCCTGCCTCTCAAGATTTCGGAAGACTGTCT
CTACCTGAATATTTACAGTCCTGCCGATTTGACAAAAAGCAGCCAATTGCCTGTGATGGTGTGGATCCAT
GGAGGTGGACTGGTGATAGGCGGAGCATCACCCTATAATGGACTAGCTCTCTCTGCCCATGAGAACGTGG
TGGTAGTAACCATTCAATACCGCCTGGGTATTTGGGGATTATTTAGCACAGGTGATGAACACAGCCCAGG
AAACTGGGCTCACCTGGACCAACTGGCTGCACTACGCTGGGTCCAAGATAACATTGCAAACTTTGGAGGG
AACCCGGATTCCGTGACCATCTTTGGAGAGTCATCAGGGGGTATCAGTGTCTCTGTCCTTGTCTTATCTC
CTCTGGGCAAGGACCTCTTCCACAGAGCCATTTCTGAGAGTGGTGTGGTCATAAATACAAACGTGGGCAA
GAAGAATATACAGGCTGTGAATGAAATAATAGCTACTCTTTCCCAGTGTAATGACACCTCATCAGCTGCC
ATGGTTCAGTGCTTGCGCCAGAAGACAGAGAGTGAGCTCTTGGAGATTTCAGGGAAACTGGTACAGTACA
ATATCTCCCTGTCCACCATGATTGACGGAGTGGTGCTGCCAAAGGCACCAGAAGAGATCCTGGCTGAGAA
GAGTTTCAACACTGTCCCCTACATAGTGGGCTTCAACAAGCAAGAGTTTGGCTGGATAATTCCAATGATG
TTGCAAAATCTACTCCCTGAAGGCAAAATGAATGAGGAAACGGCCAGTCTTCTCTTGAGGAGGTTCCACT
CTGAACTTAACATCTCTGAAAGTATGATTCCAGCAGTCATTGAGCAGTACTTAAGAGGGGTAGATGACCC
TGCCAAAAAGAGTGAGCTTATCCTGGACATGTTTGGAGATATATTTTTTGGTATCCCGGCTGTGCTCTTG
TCCCGTAGCCTCAGAGATGCTGGAGTGTCCACCTACATGTATGAGTTTCGGTATCGCCCAAGCTTCGTGT
CTGACAAGAGACCCCAGACGGTTGAGGGTGATCATGGCGATGAAATCTTCTTTGTATTCGGGGCTCCACT
ATTAAAAGAGGGTGCCTCAGAAGAGGAAACCAACCTCAGCAAGATGGTGATGAAATTCTGGGCCAACTTT
GCTCGAAATGGGAACCCTAATGGGGAGGGGCTGCCTCACTGGCCAGAATATGATGAGCAGGAAGGGTATC
TACAGATTGGAGCCACTACCCAGCAAGCCCAGAGACTGAAAGCAGAGGAAGTGGCTTTCTGGACTGAGCT
CCTGGCTAAGAATCCACCTGAGACAGACCCTACTGAACACACAGAACACAAATGA

Translation (554 aa):
MWLHALVWASLAVCPILGHSLLPPVVDTTQGKVLGKYISLEGFEQPVAVFLGVPFAKPPLGSLRFAPPQP
AEPWSFVKNATSYPPMCSQDAGWAKILSDMFSTEKEILPLKISEDCLYLNIYSPADLTKSSQLPVMVWIH
GGGLVIGGASPYNGLALSAHENVVVVTIQYRLGIWGLFSTGDEHSPGNWAHLDQLAALRWVQDNIANFGG
NPDSVTIFGESSGGISVSVLVLSPLGKDLFHRAISESGVVINTNVGKKNIQAVNEIIATLSQCNDTSSAA
MVQCLRQKTESELLEISGKLVQYNISLSTMIDGVVLPKAPEEILAEKSFNTVPYIVGFNKQEFGWIIPMM
LQNLLPEGKMNEETASLLLRRFHSELNISESMIPAVIEQYLRGVDDPAKKSELILDMFGDIFFGIPAVLL
SRSLRDAGVSTYMYEFRYRPSFVSDKRPQTVEGDHGDEIFFVFGAPLLKEGASEEETNLSKMVMKFWANF
ARNGNPNGEGLPHWPEYDEQEGYLQIGATTQQAQRLKAEEVAFWTELLAKNPPETDPTEHTEHK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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