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Report for CCDS22530.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22530.1 Public Mus musculus 8 Ces1f 23 108 98 CCDS HistoryNCBI Gene:234564Re-query CCDS DB by CCDS ID:22530.1Re-query CCDS DB by GeneID:234564See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22530.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034178.8 ENSMUSP00000034178.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034178.8Link to Ensembl Protein Viewer:ENSMUSP00000034178.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034178Re-query CCDS DB by Protein ID:ENSMUSP00000034178
Original member Current member NCBI NM_144930.2 NP_659179.1 Accepted alive Link to Nucleotide Sequence:NM_144930.2Link to Protein Sequence:NP_659179.1Re-query CCDS DB by Nucleotide ID:NM_144930Re-query CCDS DB by Protein ID:NP_659179Link to BLAST:NP_659179.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659179.1 561 Q91WU0-1 561 100% 0 0

Chromosomal Locations for CCDS 22530.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 93256429 93256600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93256864 93256936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93258257 93258388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93262978 93263125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93263320 93263400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93265742 93265882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93266224 93266262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93267252 93267356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93267987 93268091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93269974 93270127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93271831 93271964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93274113 93274257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93275242 93275446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93279649 93279700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1686 nt):
ATGTTCCTTAGCACTCTGTTCCTGGTGTCTCTAGCAACCTGTGTGATTTGCGGAAATCCCTCTTCACCAC
CTGTGGTAGACACTGCTCATGGTAAAGTCCTGGGGAAACACGTGAACGTAGAAGGATTTTCACAGCCTGT
GGCCGTCTTCCTGGGAATCCCCTTTGCCAAGCCCCCTCTTGGATCCCTGAGGTTTGCTCCACCACAGCCT
GCAGAGCCCTGGAGCTCAGTGAAGAATGCCACCACCTACCCACCTATGTGCTCCCAAGATGCAGCTAGAG
GACAGGCGGTCAATGACCTCATAACCAATAGAAAGGAGAAAATCCATCTTGAATTTTCTGAAGATTGCCT
GTACCTAAATATTTACACTCCTGCGGACTTTTCAAAGAACAGTAGGCTACCGGTGATGGTGTGGATCCAT
GGAGGTGGACTGAAGCTGGGTGGGGCATCAAGCTTTGATGGACGGGCTCTCTCTGCATACGAAAATGTGG
TGGTGGTGGCCATTCAATATCGCCTGAGTATCTGGGGATTCTTCAGCACAGGGGATGAACACAGTCGGGG
AAACTGGGGTCATTTGGACCAAGTGGCTGCTCTGCATTGGGTCCAGGACAACATTGCCAACTTTGGCGGG
GACCCAGGCTCTGTGACCATCTTTGGAGAGTCAGCAGGAGGTTACAGTGTCTCAATTCTTATATTGTCCC
CATTGTCCAAGAACCTCTTCCACAGGGCCATTTCTGAGAGTGGTGTGGCCTTCATTCCTGGAATGTTTAC
CAAAGATGTGAGGCCAATTACTGAGCAAATTGCTGTTACTGCTGGCTGTAAGACCACCACGTCTGCCGTC
ATTGTTCACTGCATGCGCCAGAAGACGGAGGAGGAGCTATTAGAGATCATGCATAAATTGAATCTGTATA
AACTGAGTTTACAAGGAGATACCAAAAATAGCGACCAGTTCGTGACAAGTGTGCTTGATGGAGTGGTGCT
ACCAAAGGACCCCAAAGAGATCCTGGCTGAGAAGAACTTCAACACTGTGCCTTACATTGTGGGAATCAAC
AAGCAAGAATGTGGCTGGCTTCTGCCAACAATGACGGGATTTCTACCAGCTGATGTAAAATTGGACAAGA
AGAAAGCCATTGCACTCCTGGAGCAATTTGCTTCCATGACTGGCATACCAGAGGATATTATTCCAGTTGC
TGTTGAGAAGTACACAAAAGGTAGTGATGACCCTGATCAGATCAGAGAGGGAGTTCTCGACGCAATGGGG
GATGTGGCATTTGGTGTTCCATCGGTGATTGTGTCCCGTGGCCACAGAGACACTGGAGCTCCCACCTACA
TGTATGAGTATCAATACTACCCAAGCTTCTCATCACCCCAAAGACCCAAGAATGTAGTAGGAGACCATGC
AGATGATGTCTACTCTGTCTTCGGTGCTCCAATTTTAAGAGAGGGTGCCTCCGAAGAGGAGATCAATCTC
AGCAAGATGGTGATGAAATTCTGGGCCAACTTTGCTCGGAATGGGAACCCTAATGGCAAAGGGCTGCCTC
ATTGGCCAAAGTATGATCAGAAAGAAGGATATCTTCATATTGGTGGCACCACCCAGCAAGCCCAGAGACT
GAAGGAAGAGGAAGTGACTTTCTGGACACAGTCCCTTGCCAAGAAACAACCCCAGCCATACCACAATGAG
CTGTGA

Translation (561 aa):
MFLSTLFLVSLATCVICGNPSSPPVVDTAHGKVLGKHVNVEGFSQPVAVFLGIPFAKPPLGSLRFAPPQP
AEPWSSVKNATTYPPMCSQDAARGQAVNDLITNRKEKIHLEFSEDCLYLNIYTPADFSKNSRLPVMVWIH
GGGLKLGGASSFDGRALSAYENVVVVAIQYRLSIWGFFSTGDEHSRGNWGHLDQVAALHWVQDNIANFGG
DPGSVTIFGESAGGYSVSILILSPLSKNLFHRAISESGVAFIPGMFTKDVRPITEQIAVTAGCKTTTSAV
IVHCMRQKTEEELLEIMHKLNLYKLSLQGDTKNSDQFVTSVLDGVVLPKDPKEILAEKNFNTVPYIVGIN
KQECGWLLPTMTGFLPADVKLDKKKAIALLEQFASMTGIPEDIIPVAVEKYTKGSDDPDQIREGVLDAMG
DVAFGVPSVIVSRGHRDTGAPTYMYEYQYYPSFSSPQRPKNVVGDHADDVYSVFGAPILREGASEEEINL
SKMVMKFWANFARNGNPNGKGLPHWPKYDQKEGYLHIGGTTQQAQRLKEEEVTFWTQSLAKKQPQPYHNE
L


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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