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Report for CCDS22593.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22593.1 Public Mus musculus 8 Phaf1 23 108 98 CCDS HistoryNCBI Gene:234678Re-query CCDS DB by CCDS ID:22593.1Re-query CCDS DB by GeneID:234678See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22593.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034361.9 ENSMUSP00000034361.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034361.9Link to Ensembl Protein Viewer:ENSMUSP00000034361.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000034361Re-query CCDS DB by Protein ID:ENSMUSP00000034361
Original member NCBI NM_145604.2 NP_663579.2 Updated not alive Link to Nucleotide Sequence:NM_145604.2Link to Protein Sequence:NP_663579.2Re-query CCDS DB by Nucleotide ID:NM_145604Re-query CCDS DB by Protein ID:NP_663579
Current member NCBI NM_145604.3 NP_663579.2 Accepted alive Link to Nucleotide Sequence:NM_145604.3Link to Protein Sequence:NP_663579.2Re-query CCDS DB by Nucleotide ID:NM_145604Re-query CCDS DB by Protein ID:NP_663579Link to BLAST:NP_663579.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663579.2 422 Q922R1 422 100% 0 0

Chromosomal Locations for CCDS 22593.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105225423 105225486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105231128 105231210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105234482 105234565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105238423 105238466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105239671 105239750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105239978 105240072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105240841 105240938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105241027 105241139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105246421 105246554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105246838 105246921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105248096 105248178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105248743 105248786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105249419 105249462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105249597 105249655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105250719 105250791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105251598 105251684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGCTGGACCTGGAGGTGGTGCCTGAACGCTCTCTGGGGAACGAGCAATGGGAATTCACTCTGGGAATGC
CTCTGGCGCAGGCGGTCGCCATTCTTCAGAAGCACTGTCGCATCATCAGAAACGTCCAGGTTCTCTACAG
TGAGCAGTCTCCTCTAAGCCATGACCTCATCCTTAACCTGACTCAGGACGGGATCACACTACTGTTTGAT
GCTTTCAACCAGAGACTCAAGGTGATTGAAGTTTGTGAGTTGACAAAAGTAAAGTTAAAGTATTGTGGAG
TGCATTTTAACTCTCAGGCCATCGCTCCTACCATTGAGCAAATTGACCAGTCTTTTGGCGCAACCCATCC
TGGAGTGTACAACTCTACTGAGCAGCTCTTCCACCTCAACTTCCGAGGACTGTCTTTCTCTTTTCAGTTA
GACTCGTGGACGGAGGCTCCCAAGTATGAGCCCAATTTTGCCCATGGTCTAGCTTCTCTTCAGATACCCC
ATGGAGCAACTGTAAAACGAATGTACATCTATAGTGGGAACAGCCTCCAGGATACCAAGGCTCCTGTGAT
GCCCTTGAGCTGTTTCCTGGGGAATGTATATGCTGAAAGTGTAGACGTTCTTCGAGATGGAACTGGACCC
TCAGGGTTGCGACTTCGCTTGCTCGCTGCAGGTTGTGGACCTGGAGTGTTAGCAGATGCCAAAATGAGAG
TATTTGAGCGTGCGGTGTATTTTGGTGATTCTTGCCAAGATGTTCTTAGCATGCTTGGCTCTCCACACAA
AGTCTTCTATAAATCTGAAGACAAGATGAAAATTCACTCTCCTTCCCCTCATAAACAAGTTCCGTCCAAG
TGCAACGACTACTTTTTTAACTATTTTACTCTCGGAGTGGACATCCTGTTTGATGCAAATACACACAAAG
TGAAGAAGTTTGTCCTGCATACCAATTACCCTGGGCATTATAATTTTAACATTTACCACCGCTGTGAGTT
CAAGATCCCACTGGCCATAAAGAAAGAAAATGCAGGTGGTCAGACTGAAATATGCACAACCTACAGCAAG
TGGGACAGCATCCAGGAGCTTCTGGGCCATCCTGTGGAGAAGCCTGTTGTCTTGCACAGGTCCTCATCCC
CAAATAACACCAATCCGTTTGGCTCCACATTCTGCTTTGGTCTTCAGCGGATGATCTTTGAGGTCATGCA
GAACAACCACATTGCCTCAGTGACCCTGTATGGCCCCCCCAGGCCTGGTGCCCACCTGAGAACAGCAGAG
CTGCCCTAA

Translation (422 aa):
MLDLEVVPERSLGNEQWEFTLGMPLAQAVAILQKHCRIIRNVQVLYSEQSPLSHDLILNLTQDGITLLFD
AFNQRLKVIEVCELTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSTEQLFHLNFRGLSFSFQL
DSWTEAPKYEPNFAHGLASLQIPHGATVKRMYIYSGNSLQDTKAPVMPLSCFLGNVYAESVDVLRDGTGP
SGLRLRLLAAGCGPGVLADAKMRVFERAVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSK
CNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFKIPLAIKKENAGGQTEICTTYSK
WDSIQELLGHPVEKPVVLHRSSSPNNTNPFGSTFCFGLQRMIFEVMQNNHIASVTLYGPPRPGAHLRTAE
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 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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