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Report for CCDS2264.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2264.2 Public Homo sapiens 2 HOXD13 24 110 108 CCDS HistoryNCBI Gene:3239Re-query CCDS DB by CCDS ID:2264.2Re-query CCDS DB by GeneID:3239See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 2264.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392539.4 ENSP00000376322.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392539.4Link to Ensembl Protein Viewer:ENSP00000376322.3Re-query CCDS DB by Nucleotide ID:ENST00000392539Re-query CCDS DB by Protein ID:ENSP00000376322
Original member Current member NCBI NM_000523.4 NP_000514.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000523.4Link to Protein Sequence:NP_000514.2Re-query CCDS DB by Nucleotide ID:NM_000523Re-query CCDS DB by Protein ID:NP_000514Link to BLAST:NP_000514.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000514.2 343 P35453 343 100% 0 0

Chromosomal Locations for CCDS 2264.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 176092891 176093671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 176094480 176094730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGAGCCGCGCCGGGAGCTGGGACATGGACGGGCTGCGGGCAGACGGCGGGGGCGCCGGTGGCGCCCCGG
CCTCTTCCTCCTCCTCATCGGTGGCGGCGGCGGCGGCGTCAGGCCAGTGCCGCGGCTTTCTCTCCGCGCC
TGTGTTCGCCGGGACGCATTCGGGGCGGGCGGCGGCGGCGGCAGCGGCGGCTGCGGCGGCGGCGGCGGCA
GCCTCCGGCTTTGCGTACCCCGGGACCTCTGAGCGCACGGGCTCTTCCTCGTCGTCGTCCTCTTCTGCCG
TTGTAGCGGCGCGCCCGGAGGCTCCCCCAGCCAAAGAGTGCCCAGCACCCACGCCTGCAGCGGCCGCTGC
AGCGCCCCCGAGCGCTCCAGCGCTGGGCTACGGCTACCACTTCGGCAACGGCTACTACAGCTGCCGTATG
TCGCACGGCGTGGGCTTACAGCAGAATGCGCTCAAGTCATCGCCGCACGCCTCGCTGGGAGGCTTTCCCG
TGGAGAAGTACATGGACGTGTCAGGCCTGGCGAGCAGCAGCGTACCGGCCAACGAGGTGCCAGCGCGAGC
CAAGGAGGTATCCTTCTACCAGGGCTATACGAGCCCTTACCAGCACGTGCCCGGCTATATCGACATGGTG
TCCACTTTCGGCTCCGGGGAGCCTCGGCACGAGGCCTACATCTCCATGGAGGGGTACCAGTCCTGGACGC
TGGCTAACGGGTGGAACAGCCAGGTGTACTGCACCAAGGACCAGCCACAGGGGTCCCACTTTTGGAAATC
TTCCTTTCCAGGGGATGTGGCTCTAAATCAGCCGGACATGTGCGTCTACCGAAGAGGGAGGAAGAAGAGA
GTGCCTTACACCAAACTGCAGCTTAAAGAACTGGAGAACGAGTATGCCATTAACAAATTCATTAACAAGG
ACAAGCGGCGGCGTATCTCGGCTGCTACGAACCTATCTGAGAGACAAGTGACCATTTGGTTTCAGAACCG
AAGAGTGAAGGACAAGAAAATTGTCTCCAAGCTCAAAGATACTGTCTCCTGA

Translation (343 aa):
MSRAGSWDMDGLRADGGGAGGAPASSSSSSVAAAAASGQCRGFLSAPVFAGTHSGRAAAAAAAAAAAAAA
ASGFAYPGTSERTGSSSSSSSSAVVAARPEAPPAKECPAPTPAAAAAAPPSAPALGYGYHFGNGYYSCRM
SHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPANEVPARAKEVSFYQGYTSPYQHVPGYIDMV
STFGSGEPRHEAYISMEGYQSWTLANGWNSQVYCTKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKR
VPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDTVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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