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Report for CCDS22738.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22738.1 Public Mus musculus 8 Mvd 23 108 98 CCDS HistoryNCBI Gene:192156Re-query CCDS DB by CCDS ID:22738.1Re-query CCDS DB by GeneID:192156See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22738.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006692.5 ENSMUSP00000006692.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006692.5Link to Ensembl Protein Viewer:ENSMUSP00000006692.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000006692Re-query CCDS DB by Protein ID:ENSMUSP00000006692
Original member Current member NCBI NM_138656.2 NP_619597.2 Accepted alive Link to Nucleotide Sequence:NM_138656.2Link to Protein Sequence:NP_619597.2Re-query CCDS DB by Nucleotide ID:NM_138656Re-query CCDS DB by Protein ID:NP_619597Link to BLAST:NP_619597.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_619597.2 401 Q99JF5 401 100% 0 0

Chromosomal Locations for CCDS 22738.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 122434095 122434175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122434804 122434912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122436474 122436589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122437010 122437228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122437415 122437489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122437827 122438026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122439377 122439523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122439638 122439752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122440182 122440252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122443294 122443366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1206 nt):
ATGGCCTCAGAAAAGCCTCAGGACCTAATGGTCACCTGCACGGCGCCGGTCAACATCGCAGTTATCAAGT
ACTGGGGGAAGCGAGATGAAGCGCTGATCCTGCCCATCAACTCCTCCCTGAGCGTCACGCTGCACCAGGA
CCAGCTAAAAACGACCACAACCGTTGCCATTAGCAAGGACTTCACAGAGGACCGCATCTGGCTGAATGGT
CGCGAGGAGGACGTGGGGCAGCCACGGCTCCAGGCCTGCCTGAGAGAGATTCGCCGCCTGGCTCGGAAGC
GGAGGAGCACAGAGGACGGGGACACTCTACCCCTCAGCCTCAGCTATAAGGTGCACGTGGCGTCAGTGAA
CAACTTCCCCACTGCTGCAGGCCTGGCGTCCTCAGCCGCAGGCTATGCCTGCCTAGCCTATACCCTGGCT
CAGGTCTATGGGGTTGAGGGAGACCTCTCCGAAGTGGCTCGGCGGGGCTCAGGCAGTGCGTGCCGCAGTC
TCTATGGGGGCTTTGTGGAGTGGCAGATGGGGGAACAGGCCGATGGGAAGGACAGCATCGCCCGGCAGAT
AGCCCCAGAGTGGCACTGGCCCCAGCTCCGAATCCTTATCCTTGTGGTGAGCGCCGACAAGAAGCAGACG
GGCAGTACAGTGGGCATGCAGACCAGCGTGGAGACCAGCACCCTGCTCAAGTTCCGGGCTGAGTCTGTTG
TGCCTGAGCGCATGAAGGAGATGACCCGCTGCATCCAAGAGCAGGACTTTCAGGGCTTTGCCCAGCTGAC
CATGAAGGATAGCAACCAGTTTCATGCCACCTGCCTGGACACCTTCCCACCGATCTCCTACCTCAATGAC
ACCTCCAGGCGCATCATCCAGCTAGTCCACCGCTTCAACACCCACCAGGGGCAGACGAAGGTGGCATACA
CATTTGATGCTGGCCCCAACGCTGTGATCTTCACTCTGGAGGACACTGTGGCTGAGTTTGTGGCAGCTGT
AAGACACAGCTTTCCCCCTGCAGCCAATGGAGACAAGTTCCTAAAGGGGCTGCAGGTGGCACCTGTTCTT
CTCTCTGATGAGCTGAAGGCCGCGCTGGCGGTGGAGCCCAGCCCTGGTGGGGTCCAGTACATCATTGCCA
CTCAGGTCGGACCAGGACCTCAAGTCCTAGACGACACTCATGATCATCTGCTAGGCCAGGATGGACTGCC
ACAACGGGACCTTTGA

Translation (401 aa):
MASEKPQDLMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWLNG
REEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSLSYKVHVASVNNFPTAAGLASSAAGYACLAYTLA
QVYGVEGDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQT
GSTVGMQTSVETSTLLKFRAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLND
TSRRIIQLVHRFNTHQGQTKVAYTFDAGPNAVIFTLEDTVAEFVAAVRHSFPPAANGDKFLKGLQVAPVL
LSDELKAALAVEPSPGGVQYIIATQVGPGPQVLDDTHDHLLGQDGLPQRDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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