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Report for CCDS22935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22935.1 Public Mus musculus 9 Eepd1 23 108 98 CCDS HistoryNCBI Gene:67484Re-query CCDS DB by CCDS ID:22935.1Re-query CCDS DB by GeneID:67484See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22935.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040677.5 ENSMUSP00000047083.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040677.5Link to Ensembl Protein Viewer:ENSMUSP00000047083.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000040677Re-query CCDS DB by Protein ID:ENSMUSP00000047083
Original member Current member NCBI NM_026189.3 NP_080465.3 Accepted alive Link to Nucleotide Sequence:NM_026189.3Link to Protein Sequence:NP_080465.3Re-query CCDS DB by Nucleotide ID:NM_026189Re-query CCDS DB by Protein ID:NP_080465Link to BLAST:NP_080465.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080465.3 569 Q3TGW2 569 100% 0 0

Chromosomal Locations for CCDS 22935.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 25482442 25483319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 25547552 25547603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 25581892 25582002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 25586662 25586796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 25589435 25589573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 25594561 25594755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 25603409 25603608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1710 nt):
ATGGGGAGCACACTGGGCTGCCATCGCTCTATCCCCAGAGATCCCTCGGACCTGTCACATAACCGCAAGT
TCAGCGCTGCCTGCAACTTCAGCAACATCCTGGTGAATCAGGAGCGGCTAAATATCAACACTGCCACTGA
GGAGGAACTGATGACTCTGCCTGGGGTGACACGTGCAGTGGCCCGAAGCATCGTGGAATACCGAGAATAT
ATCGGCGGCTTCAAAAAGGTGGAAGATCTGGCACTTGTCAGTGGTGTAGGGGCCACCAAACTGGAACAGG
TCAAGTTTGAGATCTGTGTGAGCAGCAAGGGTAACTCTGCACAGCACTCTCCCAGTTCCCTGAGGCGGGA
TCTTCTGGCTGAGCAGCAGCCTCATCACCTGACCACCACTGTGCCCCTCACTCCTCGAGTCAATATCAAC
ACAGCCACCCTTGCTCAGCTCATGAGTGTCCGGGGCCTCAGCGAGAAGATGGCCCTCAGCATCGTGGACT
ACCGCAGGGAACACGGTCCTTTTCGAAGTGTTGAGGACTTGGTGAGAATGGATGGAATCAATGCAGCCTT
CCTGGACAGAATAAGACACCAGGTGTTCGCAGAGAGGTCCAGGCCCCCATCAACCCACACCAATGGGGGT
CTTACCTTCACTGCCAAGCCTCATCCCAGTCCCACATCTCTGAGCCTGCAGAGTGAGGACTTGGACCTGC
CACCAGGGGGGCCCACGCAGATTATCTCCATGAGGCCCTCGGTGGAGGCCTTTGGAGGTATGAGGGATGG
GCGACCTGTGTTTAGGTTGGCCACGTGGAACTTACAGGGCTGCTCTGTGGAGAAGGCCAATAACCCGGGG
GTTCGAGAGGTGGTGTGCATGACGCTTCTGGAAAACAGCATCAAACTTCTAGCTGTGCAAGAGCTGCTTG
ACAAAGAGGCCCTGGAAAAGTTCTGTACAGAGCTGAACCAGCCGATCCTGCCCAACATCCGCAAGTGGAA
GGGGTCCCGAGGATGCTGGAGGTCCATTGTTGCTGAGAAGCCTTCCAATCAGCTCCAGAAGGGCCCCTGC
TACTCTGGATTCCTATGGGACACAGCAGCCAACGTGGAGCTGAGAGACATCCCCGGGCGGGAGAGCTCAC
CCAGCAACGGTCATGCTAAGGCTGTGGGCCCCAGCCCTTTCCTCGCCAGATTCAAGGTGGGAAGTAATGA
CTTAACCCTGGTTAACCTCCAGCTGACAGCCCTGGCCCTCCCAGGAGCTGAGAATTCAAGCAAGAATCAC
AGTGATGGCCACCGATTATTGAACTTTGCACTAACCCTCCAGGAAACCCTGAAAGGAGAAAAGGATGTTG
TTATTTTAGGGGATTTTGGCCAAGGGCCAGATAGCAATGACTACGATATCCTAAGGAGAGAAAAATTTCA
CCACCTAGTCCCGGCTCACACTTTCACCAACATCAGCACCAGGAATCCTCAAGGCTCCAAGTCTGTGGAC
AACATCTGGATCAGCAAAAGCTTAAAGAAAGTGTTCACAGGTCACTGGGCTGTTGTGAGAGAAGGGCTCA
CAAACCCTTGGATTCCAGATAACTGGTCCTGGGGTGGAGTCGCTTCTGAACATTGCCCTGTGCTTGCTGA
ATTGTACATGGAAAAGGACTGGAGCAAGAAGGAAGTCCCCAGGAATGGCAATGGAGTCACCTTAGAGCCA
AGTGAAGCCAACATTAAACATGAGCGATGA

Translation (569 aa):
MGSTLGCHRSIPRDPSDLSHNRKFSAACNFSNILVNQERLNINTATEEELMTLPGVTRAVARSIVEYREY
IGGFKKVEDLALVSGVGATKLEQVKFEICVSSKGNSAQHSPSSLRRDLLAEQQPHHLTTTVPLTPRVNIN
TATLAQLMSVRGLSEKMALSIVDYRREHGPFRSVEDLVRMDGINAAFLDRIRHQVFAERSRPPSTHTNGG
LTFTAKPHPSPTSLSLQSEDLDLPPGGPTQIISMRPSVEAFGGMRDGRPVFRLATWNLQGCSVEKANNPG
VREVVCMTLLENSIKLLAVQELLDKEALEKFCTELNQPILPNIRKWKGSRGCWRSIVAEKPSNQLQKGPC
YSGFLWDTAANVELRDIPGRESSPSNGHAKAVGPSPFLARFKVGSNDLTLVNLQLTALALPGAENSSKNH
SDGHRLLNFALTLQETLKGEKDVVILGDFGQGPDSNDYDILRREKFHHLVPAHTFTNISTRNPQGSKSVD
NIWISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAELYMEKDWSKKEVPRNGNGVTLEP
SEANIKHER


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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